Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0102

Experiment: MoLS4 with (C) D,L-Lactate (20mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0101 and DVU0102 are separated by 187 nucleotidesDVU0102 and fepC are separated by 32 nucleotidesfepC and DVU0104 are separated by 8 nucleotides DVU0101: DVU0101 - methlytransferase, UbiE/COQ5 family (TIGR), at 133,407 to 134,933 DVU0101 DVU0102: DVU0102 - cation ABC transporter, periplasmic binding protein (TIGR), at 135,121 to 136,113 DVU0102 DVU0103: fepC - cation ABC transporter, ATP-binding protein, putative (TIGR), at 136,146 to 137,087 fepC DVU0104: DVU0104 - cation ABC transporter, permease protein, putative (TIGR), at 137,096 to 137,932 DVU0104 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1at 134.127 kb on + strand, within DVU0101at 134.127 kb on + strand, within DVU0101at 134.146 kb on + strand, within DVU0101at 134.162 kb on - strand, within DVU0101at 134.246 kb on - strand, within DVU0101at 134.352 kb on + strand, within DVU0101at 134.369 kb on + strand, within DVU0101at 134.409 kb on + strand, within DVU0101at 134.409 kb on + strand, within DVU0101at 134.409 kb on + strand, within DVU0101at 134.461 kb on - strand, within DVU0101at 134.499 kb on + strand, within DVU0101at 134.504 kb on + strand, within DVU0101at 134.530 kb on - strand, within DVU0101at 134.544 kb on + strand, within DVU0101at 134.544 kb on + strand, within DVU0101at 134.581 kb on + strand, within DVU0101at 134.581 kb on + strand, within DVU0101at 134.587 kb on - strand, within DVU0101at 134.649 kb on - strand, within DVU0101at 134.693 kb on + strand, within DVU0101at 134.737 kb on - strand, within DVU0101at 134.775 kb on - strand, within DVU0101at 134.800 kb on + strandat 134.899 kb on + strandat 134.924 kb on + strandat 134.934 kb on + strandat 134.953 kb on + strandat 134.966 kb on - strandat 135.003 kb on + strandat 135.003 kb on + strandat 135.003 kb on + strandat 135.093 kb on - strandat 135.095 kb on + strandat 135.095 kb on + strandat 135.095 kb on + strandat 135.097 kb on + strandat 135.180 kb on - strandat 135.208 kb on - strandat 135.245 kb on - strand, within DVU0102at 135.255 kb on + strand, within DVU0102at 135.272 kb on - strand, within DVU0102at 135.300 kb on - strand, within DVU0102at 135.340 kb on - strand, within DVU0102at 135.391 kb on + strand, within DVU0102at 135.391 kb on + strand, within DVU0102at 135.391 kb on + strand, within DVU0102at 135.399 kb on - strand, within DVU0102at 135.447 kb on + strand, within DVU0102at 135.553 kb on - strand, within DVU0102at 135.576 kb on + strand, within DVU0102at 135.576 kb on + strand, within DVU0102at 135.606 kb on - strand, within DVU0102at 135.633 kb on + strand, within DVU0102at 135.647 kb on + strand, within DVU0102at 135.710 kb on - strand, within DVU0102at 135.742 kb on - strand, within DVU0102at 135.742 kb on - strand, within DVU0102at 135.785 kb on - strand, within DVU0102at 135.827 kb on + strand, within DVU0102at 135.827 kb on + strand, within DVU0102at 135.866 kb on + strand, within DVU0102at 135.866 kb on + strand, within DVU0102at 135.910 kb on - strand, within DVU0102at 136.107 kb on + strandat 136.145 kb on + strandat 136.305 kb on + strand, within fepCat 136.364 kb on + strand, within fepCat 136.466 kb on - strand, within fepCat 136.480 kb on + strand, within fepCat 136.488 kb on - strand, within fepCat 136.497 kb on - strand, within fepCat 136.558 kb on - strand, within fepCat 136.732 kb on + strand, within fepCat 136.733 kb on - strand, within fepCat 136.847 kb on + strand, within fepCat 136.847 kb on + strand, within fepCat 136.847 kb on + strand, within fepCat 136.881 kb on + strand, within fepCat 136.920 kb on + strand, within fepCat 136.953 kb on - strand, within fepCat 136.955 kb on + strand, within fepCat 136.960 kb on + strand, within fepCat 136.990 kb on - strand, within fepCat 136.990 kb on - strand, within fepCat 137.081 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with (C) D,L-Lactate (20mM)
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134,127 + DVU0101 0.47 -0.1
134,127 + DVU0101 0.47 +0.8
134,146 + DVU0101 0.48 +1.3
134,162 - DVU0101 0.49 -0.1
134,246 - DVU0101 0.55 -0.2
134,352 + DVU0101 0.62 +0.7
134,369 + DVU0101 0.63 +1.5
134,409 + DVU0101 0.66 +0.2
134,409 + DVU0101 0.66 -0.5
134,409 + DVU0101 0.66 +1.1
134,461 - DVU0101 0.69 -0.2
134,499 + DVU0101 0.72 -0.5
134,504 + DVU0101 0.72 +0.5
134,530 - DVU0101 0.74 +0.7
134,544 + DVU0101 0.74 +0.3
134,544 + DVU0101 0.74 +0.7
134,581 + DVU0101 0.77 -0.5
134,581 + DVU0101 0.77 +1.1
134,587 - DVU0101 0.77 -2.5
134,649 - DVU0101 0.81 -0.3
134,693 + DVU0101 0.84 -0.1
134,737 - DVU0101 0.87 +0.1
134,775 - DVU0101 0.90 +0.5
134,800 + -2.5
134,899 + -0.4
134,924 + -0.6
134,934 + +0.1
134,953 + +0.2
134,966 - +0.1
135,003 + +0.3
135,003 + -1.1
135,003 + -0.8
135,093 - -1.0
135,095 + +0.0
135,095 + -0.1
135,095 + -0.1
135,097 + -0.2
135,180 - -0.8
135,208 - -1.1
135,245 - DVU0102 0.12 -0.5
135,255 + DVU0102 0.13 -0.0
135,272 - DVU0102 0.15 -0.6
135,300 - DVU0102 0.18 -0.6
135,340 - DVU0102 0.22 +0.4
135,391 + DVU0102 0.27 +0.4
135,391 + DVU0102 0.27 +1.1
135,391 + DVU0102 0.27 +0.2
135,399 - DVU0102 0.28 +0.2
135,447 + DVU0102 0.33 -0.4
135,553 - DVU0102 0.44 -0.1
135,576 + DVU0102 0.46 -0.7
135,576 + DVU0102 0.46 -0.3
135,606 - DVU0102 0.49 -0.6
135,633 + DVU0102 0.52 +0.5
135,647 + DVU0102 0.53 +1.3
135,710 - DVU0102 0.59 -1.9
135,742 - DVU0102 0.63 -0.7
135,742 - DVU0102 0.63 -0.7
135,785 - DVU0102 0.67 -1.3
135,827 + DVU0102 0.71 -0.7
135,827 + DVU0102 0.71 +1.1
135,866 + DVU0102 0.75 +0.3
135,866 + DVU0102 0.75 -0.3
135,910 - DVU0102 0.79 +0.6
136,107 + +0.1
136,145 + +0.2
136,305 + fepC DVU0103 0.17 -0.3
136,364 + fepC DVU0103 0.23 +0.1
136,466 - fepC DVU0103 0.34 -0.3
136,480 + fepC DVU0103 0.35 -0.2
136,488 - fepC DVU0103 0.36 +0.8
136,497 - fepC DVU0103 0.37 -0.1
136,558 - fepC DVU0103 0.44 -0.1
136,732 + fepC DVU0103 0.62 -0.1
136,733 - fepC DVU0103 0.62 +1.4
136,847 + fepC DVU0103 0.74 +0.5
136,847 + fepC DVU0103 0.74 +1.4
136,847 + fepC DVU0103 0.74 -0.3
136,881 + fepC DVU0103 0.78 -0.1
136,920 + fepC DVU0103 0.82 -0.3
136,953 - fepC DVU0103 0.86 +0.7
136,955 + fepC DVU0103 0.86 -0.2
136,960 + fepC DVU0103 0.86 +0.3
136,990 - fepC DVU0103 0.90 +0.1
136,990 - fepC DVU0103 0.90 +0.1
137,081 + -0.0

Or see this region's nucleotide sequence