Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0526 and maF are separated by 100 nucleotides maF and pgpA overlap by 8 nucleotides pgpA and rrf2 are separated by 100 nucleotides
DVU0526: DVU0526 - drug resistance transporter, putative (TIGR), at 598,929 to 600,332
DVU0526
DVU0527: maF - septum formation protein Maf (TIGR), at 600,433 to 601,065
maF
DVU0528: pgpA - phosphatidylglycerophosphatase (TIGR), at 601,058 to 601,537
pgpA
DVU0529: rrf2 - Rrf2 protein (voordouw), at 601,638 to 602,090
rrf2
Position (kb) 600
601
602 Strain fitness (log2 ratio) -1
0
1 at 599.447 kb on - strand, within DVU0526 at 599.528 kb on + strand, within DVU0526 at 599.535 kb on + strand, within DVU0526 at 599.566 kb on - strand, within DVU0526 at 599.656 kb on - strand, within DVU0526 at 599.717 kb on + strand, within DVU0526 at 599.764 kb on + strand, within DVU0526 at 599.807 kb on + strand, within DVU0526 at 599.807 kb on + strand, within DVU0526 at 599.807 kb on + strand, within DVU0526 at 599.815 kb on - strand, within DVU0526 at 599.815 kb on - strand, within DVU0526 at 599.817 kb on + strand, within DVU0526 at 599.865 kb on - strand, within DVU0526 at 599.950 kb on - strand, within DVU0526 at 600.021 kb on + strand, within DVU0526 at 600.062 kb on + strand, within DVU0526 at 600.067 kb on + strand, within DVU0526 at 600.133 kb on - strand, within DVU0526 at 600.146 kb on + strand, within DVU0526 at 600.156 kb on - strand, within DVU0526 at 600.199 kb on - strand at 600.222 kb on - strand at 600.245 kb on + strand at 600.256 kb on + strand at 600.321 kb on + strand at 600.326 kb on + strand at 600.406 kb on + strand at 600.406 kb on + strand at 600.406 kb on + strand at 600.408 kb on + strand at 600.443 kb on - strand at 600.448 kb on - strand at 600.462 kb on + strand at 600.519 kb on + strand, within maF at 600.539 kb on - strand, within maF at 600.566 kb on + strand, within maF at 600.623 kb on - strand, within maF at 600.642 kb on + strand, within maF at 600.648 kb on - strand, within maF at 600.677 kb on - strand, within maF at 600.692 kb on + strand, within maF at 600.726 kb on + strand, within maF at 600.775 kb on + strand, within maF at 600.822 kb on - strand, within maF at 600.932 kb on - strand, within maF at 601.521 kb on + strand at 601.580 kb on - strand at 601.629 kb on + strand at 601.636 kb on + strand at 601.776 kb on + strand, within rrf2 at 601.791 kb on - strand, within rrf2 at 601.851 kb on + strand, within rrf2 at 601.872 kb on + strand, within rrf2 at 601.872 kb on + strand, within rrf2 at 601.936 kb on + strand, within rrf2 at 602.011 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2 at 602.021 kb on + strand, within rrf2
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4) remove 599,447 - DVU0526 0.37 -0.0 599,528 + DVU0526 0.43 -0.6 599,535 + DVU0526 0.43 -1.4 599,566 - DVU0526 0.45 -0.1 599,656 - DVU0526 0.52 -0.2 599,717 + DVU0526 0.56 -0.6 599,764 + DVU0526 0.59 -0.3 599,807 + DVU0526 0.63 -0.5 599,807 + DVU0526 0.63 -0.3 599,807 + DVU0526 0.63 -0.5 599,815 - DVU0526 0.63 -0.0 599,815 - DVU0526 0.63 -0.1 599,817 + DVU0526 0.63 +0.7 599,865 - DVU0526 0.67 -0.8 599,950 - DVU0526 0.73 -0.7 600,021 + DVU0526 0.78 -0.4 600,062 + DVU0526 0.81 -0.0 600,067 + DVU0526 0.81 -0.4 600,133 - DVU0526 0.86 -0.2 600,146 + DVU0526 0.87 +0.3 600,156 - DVU0526 0.87 +0.1 600,199 - -0.1 600,222 - +0.3 600,245 + -0.2 600,256 + -1.2 600,321 + -0.2 600,326 + +0.1 600,406 + +0.2 600,406 + +0.1 600,406 + -0.0 600,408 + +0.3 600,443 - +0.6 600,448 - +0.3 600,462 + -0.2 600,519 + maF DVU0527 0.14 +0.2 600,539 - maF DVU0527 0.17 -0.9 600,566 + maF DVU0527 0.21 -0.1 600,623 - maF DVU0527 0.30 -0.0 600,642 + maF DVU0527 0.33 +0.2 600,648 - maF DVU0527 0.34 +0.3 600,677 - maF DVU0527 0.39 +0.4 600,692 + maF DVU0527 0.41 +0.2 600,726 + maF DVU0527 0.46 -0.3 600,775 + maF DVU0527 0.54 +0.2 600,822 - maF DVU0527 0.61 -0.0 600,932 - maF DVU0527 0.79 +0.1 601,521 + +0.1 601,580 - -0.1 601,629 + +0.3 601,636 + +0.7 601,776 + rrf2 DVU0529 0.30 -1.5 601,791 - rrf2 DVU0529 0.34 +0.6 601,851 + rrf2 DVU0529 0.47 -0.2 601,872 + rrf2 DVU0529 0.52 +0.6 601,872 + rrf2 DVU0529 0.52 -0.1 601,936 + rrf2 DVU0529 0.66 -0.2 602,011 + rrf2 DVU0529 0.82 -0.3 602,021 + rrf2 DVU0529 0.85 -0.4 602,021 + rrf2 DVU0529 0.85 +0.3 602,021 + rrf2 DVU0529 0.85 -0.6
Or see this region's nucleotide sequence