Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2830

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2828 and DVU2829 are separated by 1 nucleotidesDVU2829 and DVU2830 are separated by 64 nucleotidesDVU2830 and DVU2831 are separated by 382 nucleotidesDVU2831 and DVU2832 overlap by 14 nucleotides DVU2828: DVU2828 - site-specific recombinase, phage integrase family (TIGR), at 2,936,472 to 2,937,656 DVU2828 DVU2829: DVU2829 - hypothetical protein (TIGR), at 2,937,658 to 2,937,900 DVU2829 DVU2830: DVU2830 - hypothetical protein (TIGR), at 2,937,965 to 2,938,330 DVU2830 DVU2831: DVU2831 - hypothetical protein (TIGR), at 2,938,713 to 2,938,907 DVU2831 DVU2832: DVU2832 - transcriptional regulator cII, putative (TIGR), at 2,938,894 to 2,939,355 DVU2832 Position (kb) 2937 2938 2939Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2936.968 kb on - strand, within DVU2828at 2937.005 kb on - strand, within DVU2828at 2937.007 kb on + strand, within DVU2828at 2937.066 kb on - strand, within DVU2828at 2937.102 kb on - strand, within DVU2828at 2937.104 kb on + strand, within DVU2828at 2937.123 kb on + strand, within DVU2828at 2937.133 kb on + strand, within DVU2828at 2937.133 kb on + strand, within DVU2828at 2937.141 kb on - strand, within DVU2828at 2937.141 kb on - strand, within DVU2828at 2937.148 kb on + strand, within DVU2828at 2937.169 kb on + strand, within DVU2828at 2937.184 kb on + strand, within DVU2828at 2937.212 kb on + strand, within DVU2828at 2937.283 kb on - strand, within DVU2828at 2937.357 kb on + strand, within DVU2828at 2937.360 kb on - strand, within DVU2828at 2937.360 kb on - strand, within DVU2828at 2937.402 kb on + strand, within DVU2828at 2937.402 kb on + strand, within DVU2828at 2937.410 kb on - strand, within DVU2828at 2937.410 kb on - strand, within DVU2828at 2937.410 kb on - strand, within DVU2828at 2937.420 kb on + strand, within DVU2828at 2937.444 kb on - strand, within DVU2828at 2937.444 kb on - strand, within DVU2828at 2937.500 kb on + strand, within DVU2828at 2937.502 kb on + strand, within DVU2828at 2937.508 kb on - strand, within DVU2828at 2937.600 kb on - strandat 2937.627 kb on + strandat 2937.635 kb on - strandat 2937.736 kb on - strand, within DVU2829at 2937.837 kb on - strand, within DVU2829at 2937.862 kb on + strand, within DVU2829at 2937.872 kb on + strand, within DVU2829at 2937.880 kb on - strandat 2937.880 kb on - strandat 2937.887 kb on + strandat 2937.895 kb on - strandat 2937.918 kb on - strandat 2937.924 kb on - strandat 2937.924 kb on - strandat 2937.924 kb on - strandat 2937.974 kb on + strandat 2937.991 kb on + strandat 2937.998 kb on + strandat 2937.999 kb on - strandat 2937.999 kb on - strandat 2938.022 kb on + strand, within DVU2830at 2938.030 kb on - strand, within DVU2830at 2938.050 kb on + strand, within DVU2830at 2938.089 kb on + strand, within DVU2830at 2938.144 kb on + strand, within DVU2830at 2938.186 kb on + strand, within DVU2830at 2938.259 kb on + strand, within DVU2830at 2938.268 kb on - strand, within DVU2830at 2938.284 kb on + strand, within DVU2830at 2938.284 kb on + strand, within DVU2830at 2938.289 kb on + strand, within DVU2830at 2938.297 kb on - strandat 2938.413 kb on + strandat 2938.421 kb on - strandat 2938.493 kb on + strandat 2938.519 kb on + strandat 2938.545 kb on - strandat 2938.569 kb on + strandat 2938.569 kb on + strandat 2938.629 kb on + strandat 2938.629 kb on + strandat 2938.629 kb on + strandat 2938.629 kb on + strandat 2938.629 kb on + strandat 2938.637 kb on - strandat 2938.822 kb on + strand, within DVU2831at 2938.840 kb on - strand, within DVU2831at 2938.911 kb on - strandat 2938.915 kb on - strandat 2938.930 kb on - strandat 2938.950 kb on - strand, within DVU2832at 2938.953 kb on + strand, within DVU2832at 2938.975 kb on - strand, within DVU2832at 2939.086 kb on - strand, within DVU2832at 2939.086 kb on - strand, within DVU2832at 2939.103 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.133 kb on - strand, within DVU2832at 2939.133 kb on - strand, within DVU2832at 2939.140 kb on - strand, within DVU2832at 2939.216 kb on + strand, within DVU2832at 2939.217 kb on + strand, within DVU2832at 2939.249 kb on + strand, within DVU2832at 2939.257 kb on - strand, within DVU2832

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
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2,936,968 - DVU2828 0.42 -0.8
2,937,005 - DVU2828 0.45 -0.1
2,937,007 + DVU2828 0.45 -0.2
2,937,066 - DVU2828 0.50 -0.0
2,937,102 - DVU2828 0.53 -0.7
2,937,104 + DVU2828 0.53 +0.4
2,937,123 + DVU2828 0.55 +0.0
2,937,133 + DVU2828 0.56 -0.5
2,937,133 + DVU2828 0.56 +0.3
2,937,141 - DVU2828 0.56 +1.2
2,937,141 - DVU2828 0.56 +1.6
2,937,148 + DVU2828 0.57 +0.8
2,937,169 + DVU2828 0.59 +0.2
2,937,184 + DVU2828 0.60 +0.3
2,937,212 + DVU2828 0.62 +0.7
2,937,283 - DVU2828 0.68 -1.7
2,937,357 + DVU2828 0.75 -0.1
2,937,360 - DVU2828 0.75 -0.1
2,937,360 - DVU2828 0.75 -0.3
2,937,402 + DVU2828 0.78 +1.9
2,937,402 + DVU2828 0.78 -0.0
2,937,410 - DVU2828 0.79 -0.1
2,937,410 - DVU2828 0.79 -0.1
2,937,410 - DVU2828 0.79 +0.6
2,937,420 + DVU2828 0.80 +0.1
2,937,444 - DVU2828 0.82 -0.1
2,937,444 - DVU2828 0.82 +0.5
2,937,500 + DVU2828 0.87 +0.4
2,937,502 + DVU2828 0.87 -0.4
2,937,508 - DVU2828 0.87 -0.1
2,937,600 - -0.0
2,937,627 + +0.1
2,937,635 - -0.4
2,937,736 - DVU2829 0.32 +0.0
2,937,837 - DVU2829 0.74 +0.2
2,937,862 + DVU2829 0.84 +0.1
2,937,872 + DVU2829 0.88 +0.0
2,937,880 - +1.1
2,937,880 - -0.6
2,937,887 + -0.7
2,937,895 - -0.3
2,937,918 - +0.1
2,937,924 - -0.0
2,937,924 - -0.4
2,937,924 - +0.1
2,937,974 + -0.6
2,937,991 + -0.1
2,937,998 + -0.6
2,937,999 - +0.2
2,937,999 - +1.0
2,938,022 + DVU2830 0.16 -0.0
2,938,030 - DVU2830 0.18 +0.1
2,938,050 + DVU2830 0.23 -0.3
2,938,089 + DVU2830 0.34 +0.3
2,938,144 + DVU2830 0.49 -0.4
2,938,186 + DVU2830 0.60 +2.3
2,938,259 + DVU2830 0.80 +1.1
2,938,268 - DVU2830 0.83 +0.4
2,938,284 + DVU2830 0.87 +0.3
2,938,284 + DVU2830 0.87 +0.3
2,938,289 + DVU2830 0.89 +3.0
2,938,297 - -0.4
2,938,413 + -0.6
2,938,421 - +0.2
2,938,493 + -0.2
2,938,519 + -2.2
2,938,545 - -0.1
2,938,569 + -0.2
2,938,569 + -0.3
2,938,629 + -0.1
2,938,629 + +0.2
2,938,629 + +0.2
2,938,629 + -0.3
2,938,629 + -0.6
2,938,637 - +0.4
2,938,822 + DVU2831 0.56 +0.2
2,938,840 - DVU2831 0.65 +0.3
2,938,911 - +0.0
2,938,915 - +0.7
2,938,930 - -0.1
2,938,950 - DVU2832 0.12 +0.4
2,938,953 + DVU2832 0.13 -1.0
2,938,975 - DVU2832 0.18 -0.4
2,939,086 - DVU2832 0.42 -0.8
2,939,086 - DVU2832 0.42 +0.6
2,939,103 + DVU2832 0.45 -0.4
2,939,125 + DVU2832 0.50 -0.9
2,939,125 + DVU2832 0.50 +0.6
2,939,125 + DVU2832 0.50 -0.5
2,939,125 + DVU2832 0.50 -0.1
2,939,125 + DVU2832 0.50 -0.1
2,939,133 - DVU2832 0.52 +1.1
2,939,133 - DVU2832 0.52 -0.1
2,939,140 - DVU2832 0.53 +0.0
2,939,216 + DVU2832 0.70 +0.0
2,939,217 + DVU2832 0.70 -0.7
2,939,249 + DVU2832 0.77 -0.0
2,939,257 - DVU2832 0.79 -0.0

Or see this region's nucleotide sequence