Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mopB and DVU1760 are separated by 638 nucleotides DVU1760 and DVU1762 are separated by 248 nucleotides
DVU1759: mopB - molybdenum-binding protein, HTH domain (TIGR), at 1,823,946 to 1,824,314
mopB
DVU1760: DVU1760 - transcriptional regulator, TetR family (TIGR), at 1,824,953 to 1,825,537
DVU1760
DVU1762: DVU1762 - membrane protein, putative (TIGR), at 1,825,786 to 1,826,244
DVU1762
Position (kb)
1824
1825
1826 Strain fitness (log2 ratio)
-1
0
1 at 1823.953 kb on + strand at 1823.953 kb on + strand at 1823.961 kb on - strand at 1823.972 kb on + strand at 1824.107 kb on - strand, within mopB at 1824.107 kb on - strand, within mopB at 1824.153 kb on + strand, within mopB at 1824.269 kb on + strand, within mopB at 1824.277 kb on - strand, within mopB at 1824.284 kb on + strand at 1824.301 kb on + strand at 1824.507 kb on + strand at 1824.533 kb on + strand at 1824.538 kb on + strand at 1824.584 kb on + strand at 1824.922 kb on - strand at 1824.987 kb on + strand at 1825.017 kb on + strand, within DVU1760 at 1825.017 kb on + strand, within DVU1760 at 1825.321 kb on + strand, within DVU1760 at 1825.475 kb on - strand, within DVU1760 at 1825.760 kb on + strand at 1825.845 kb on - strand, within DVU1762 at 1825.902 kb on + strand, within DVU1762 at 1825.951 kb on + strand, within DVU1762 at 1825.959 kb on - strand, within DVU1762 at 1825.959 kb on - strand, within DVU1762 at 1826.132 kb on - strand, within DVU1762 at 1826.396 kb on - strand at 1826.420 kb on + strand at 1826.420 kb on + strand at 1826.428 kb on - strand at 1826.442 kb on + strand at 1826.450 kb on - strand at 1826.451 kb on - strand at 1826.451 kb on - strand at 1826.451 kb on - strand at 1826.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4) remove 1,823,953 + +0.3 1,823,953 + +0.4 1,823,961 - -0.1 1,823,972 + -0.2 1,824,107 - mopB DVU1759 0.44 -0.4 1,824,107 - mopB DVU1759 0.44 -0.9 1,824,153 + mopB DVU1759 0.56 +0.1 1,824,269 + mopB DVU1759 0.88 +0.1 1,824,277 - mopB DVU1759 0.90 +0.1 1,824,284 + -0.2 1,824,301 + -0.2 1,824,507 + -0.1 1,824,533 + +0.2 1,824,538 + -0.3 1,824,584 + +0.2 1,824,922 - -0.3 1,824,987 + -0.3 1,825,017 + DVU1760 0.11 +0.7 1,825,017 + DVU1760 0.11 -0.0 1,825,321 + DVU1760 0.63 -0.4 1,825,475 - DVU1760 0.89 -0.1 1,825,760 + -0.3 1,825,845 - DVU1762 0.13 -0.1 1,825,902 + DVU1762 0.25 -0.8 1,825,951 + DVU1762 0.36 -0.2 1,825,959 - DVU1762 0.38 +0.9 1,825,959 - DVU1762 0.38 -0.1 1,826,132 - DVU1762 0.75 +0.2 1,826,396 - +1.2 1,826,420 + +0.5 1,826,420 + -0.8 1,826,428 - -1.4 1,826,442 + -0.8 1,826,450 - -0.8 1,826,451 - -0.0 1,826,451 - +1.0 1,826,451 - -0.2 1,826,504 - -0.8
Or see this region's nucleotide sequence