Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctV and DVUA0104.1 overlap by 4 nucleotides DVUA0104.1 and DORF831 are separated by 2 nucleotides DORF831 and DVUA0105 overlap by 4 nucleotides DVUA0105 and DVUA0106 are separated by 2 nucleotides
DVUA0104: sctV - type III secretion inner membrane protein, HrcV family (TIGR), at 140,328 to 142,421
sctV
DVUA0104.1: DVUA0104.1 - no description, at 142,418 to 142,777
DVUA0104.1
DORF831: DORF831 - SEED: FIG00602593: hypothetical protein, at 142,780 to 143,148
DORF831
DVUA0105: DVUA0105 - conserved hypothetical protein (TIGR), at 143,145 to 143,519
DVUA0105
DVUA0106: DVUA0106 - type III secretion target, YopN family (TIGR), at 143,522 to 144,646
DVUA0106
Position (kb) 142
143 Strain fitness (log2 ratio) -1
0
1 at 141.456 kb on + strand, within sctV at 141.501 kb on + strand, within sctV at 141.537 kb on + strand, within sctV at 141.568 kb on + strand, within sctV at 141.568 kb on + strand, within sctV at 141.568 kb on + strand, within sctV at 141.568 kb on + strand, within sctV at 141.576 kb on - strand, within sctV at 141.576 kb on - strand, within sctV at 141.576 kb on - strand, within sctV at 141.576 kb on - strand, within sctV at 141.576 kb on - strand, within sctV at 141.576 kb on - strand, within sctV at 141.576 kb on - strand, within sctV at 141.576 kb on - strand, within sctV at 141.675 kb on + strand, within sctV at 141.686 kb on + strand, within sctV at 141.686 kb on + strand, within sctV at 141.720 kb on + strand, within sctV at 141.740 kb on + strand, within sctV at 141.748 kb on - strand, within sctV at 141.784 kb on + strand, within sctV at 141.784 kb on + strand, within sctV at 141.909 kb on - strand, within sctV at 141.961 kb on + strand, within sctV at 142.040 kb on - strand, within sctV at 142.112 kb on - strand, within sctV at 142.147 kb on - strand, within sctV at 142.147 kb on - strand, within sctV at 142.161 kb on + strand, within sctV at 142.169 kb on - strand, within sctV at 142.169 kb on - strand, within sctV at 142.396 kb on + strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.453 kb on + strand at 142.522 kb on - strand, within DVUA0104.1 at 142.605 kb on - strand, within DVUA0104.1 at 142.627 kb on + strand, within DVUA0104.1 at 142.640 kb on - strand, within DVUA0104.1 at 142.696 kb on + strand, within DVUA0104.1 at 142.731 kb on - strand, within DVUA0104.1 at 142.786 kb on - strand at 143.040 kb on - strand, within DORF831 at 143.275 kb on + strand, within DVUA0105 at 143.345 kb on - strand, within DVUA0105 at 143.475 kb on - strand, within DVUA0105 at 143.508 kb on + strand at 143.516 kb on - strand at 143.519 kb on + strand at 143.572 kb on - strand at 143.575 kb on - strand at 143.578 kb on - strand at 143.579 kb on + strand at 143.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4) remove 141,456 + sctV DVUA0104 0.54 -0.3 141,501 + sctV DVUA0104 0.56 +0.1 141,537 + sctV DVUA0104 0.58 -0.2 141,568 + sctV DVUA0104 0.59 +0.2 141,568 + sctV DVUA0104 0.59 -0.6 141,568 + sctV DVUA0104 0.59 -0.1 141,568 + sctV DVUA0104 0.59 +0.7 141,576 - sctV DVUA0104 0.60 +0.5 141,576 - sctV DVUA0104 0.60 +0.8 141,576 - sctV DVUA0104 0.60 +0.4 141,576 - sctV DVUA0104 0.60 -0.1 141,576 - sctV DVUA0104 0.60 -0.6 141,576 - sctV DVUA0104 0.60 -0.2 141,576 - sctV DVUA0104 0.60 -0.1 141,576 - sctV DVUA0104 0.60 -0.2 141,675 + sctV DVUA0104 0.64 +0.3 141,686 + sctV DVUA0104 0.65 +0.0 141,686 + sctV DVUA0104 0.65 -0.6 141,720 + sctV DVUA0104 0.66 +0.6 141,740 + sctV DVUA0104 0.67 +0.2 141,748 - sctV DVUA0104 0.68 -0.0 141,784 + sctV DVUA0104 0.70 -0.2 141,784 + sctV DVUA0104 0.70 -0.5 141,909 - sctV DVUA0104 0.76 -0.4 141,961 + sctV DVUA0104 0.78 +0.5 142,040 - sctV DVUA0104 0.82 -0.1 142,112 - sctV DVUA0104 0.85 -0.1 142,147 - sctV DVUA0104 0.87 -0.7 142,147 - sctV DVUA0104 0.87 -0.1 142,161 + sctV DVUA0104 0.88 -0.4 142,169 - sctV DVUA0104 0.88 -0.2 142,169 - sctV DVUA0104 0.88 +0.1 142,396 + +0.1 142,427 - -1.3 142,427 - -0.3 142,427 - -0.1 142,453 + -1.2 142,522 - DVUA0104.1 0.29 +0.5 142,605 - DVUA0104.1 0.52 -0.4 142,627 + DVUA0104.1 0.58 -0.2 142,640 - DVUA0104.1 0.62 -0.0 142,696 + DVUA0104.1 0.77 +0.2 142,731 - DVUA0104.1 0.87 +0.1 142,786 - +0.1 143,040 - DORF831 0.70 -0.4 143,275 + DVUA0105 0.35 +0.0 143,345 - DVUA0105 0.53 -0.2 143,475 - DVUA0105 0.88 -0.1 143,508 + +0.1 143,516 - +0.1 143,519 + -0.6 143,572 - -0.1 143,575 - -0.2 143,578 - -0.3 143,579 + -0.4 143,597 - -0.1
Or see this region's nucleotide sequence