Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0823

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0822 and tRNA-Ser are separated by 155 nucleotidestRNA-Ser and argJ are separated by 156 nucleotidesargJ and secA are separated by 278 nucleotides DVU0822: DVU0822 - hypothetical protein (TIGR), at 910,522 to 911,178 DVU0822 DVU_tRNA-Ser-3: tRNA-Ser - tRNA with anticodon GCT for Ser (VIMSS-AUTO), at 911,334 to 911,428 tRNA-Ser DVU0823: argJ - Glutamate N-acetyltransferase (EC 2.3.1.35) (from data), at 911,585 to 912,766 argJ DVU0825: secA - preprotein translocase, SecA subunit (TIGR), at 913,045 to 915,546 secA Position (kb) 911 912 913Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 910.619 kb on + strand, within DVU0822at 910.878 kb on + strand, within DVU0822at 910.971 kb on - strand, within DVU0822at 911.587 kb on - strandat 911.661 kb on - strandat 911.719 kb on - strand, within argJat 911.729 kb on + strand, within argJat 911.749 kb on - strand, within argJat 911.761 kb on + strand, within argJat 911.761 kb on + strand, within argJat 911.761 kb on + strand, within argJat 911.960 kb on - strand, within argJat 912.086 kb on + strand, within argJat 912.094 kb on - strand, within argJat 912.233 kb on + strand, within argJat 912.252 kb on + strand, within argJat 912.361 kb on - strand, within argJat 912.399 kb on + strand, within argJat 912.505 kb on - strand, within argJat 912.548 kb on + strand, within argJat 912.627 kb on + strand, within argJat 912.635 kb on - strand, within argJat 912.728 kb on + strandat 912.755 kb on - strandat 912.840 kb on - strandat 912.840 kb on - strandat 912.855 kb on + strandat 912.939 kb on + strandat 912.949 kb on - strandat 913.036 kb on - strandat 913.109 kb on + strandat 913.117 kb on - strandat 913.117 kb on - strandat 913.117 kb on - strandat 913.142 kb on - strandat 913.142 kb on - strandat 913.202 kb on + strandat 913.233 kb on + strandat 913.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
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910,619 + DVU0822 0.15 +0.3
910,878 + DVU0822 0.54 -0.2
910,971 - DVU0822 0.68 -0.1
911,587 - -2.2
911,661 - -1.1
911,719 - argJ DVU0823 0.11 -3.5
911,729 + argJ DVU0823 0.12 -4.1
911,749 - argJ DVU0823 0.14 -1.0
911,761 + argJ DVU0823 0.15 -3.5
911,761 + argJ DVU0823 0.15 -3.1
911,761 + argJ DVU0823 0.15 -2.2
911,960 - argJ DVU0823 0.32 -6.3
912,086 + argJ DVU0823 0.42 -5.3
912,094 - argJ DVU0823 0.43 -6.2
912,233 + argJ DVU0823 0.55 -5.2
912,252 + argJ DVU0823 0.56 -5.5
912,361 - argJ DVU0823 0.66 -7.1
912,399 + argJ DVU0823 0.69 -2.0
912,505 - argJ DVU0823 0.78 -4.8
912,548 + argJ DVU0823 0.81 -5.8
912,627 + argJ DVU0823 0.88 -3.9
912,635 - argJ DVU0823 0.89 -3.4
912,728 + -4.4
912,755 - -2.3
912,840 - +1.0
912,840 - -0.9
912,855 + +0.3
912,939 + -1.3
912,949 - -2.1
913,036 - -0.5
913,109 + +0.1
913,117 - +0.1
913,117 - +1.1
913,117 - +1.4
913,142 - +1.7
913,142 - -0.4
913,202 + -1.3
913,233 + -0.3
913,254 - +0.3

Or see this region's nucleotide sequence