Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2761

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2760 and DVU2761 are separated by 123 nucleotidesDVU2761 and DVU2762 are separated by 64 nucleotides DVU2760: DVU2760 - hypothetical protein (TIGR), at 2,868,372 to 2,868,983 DVU2760 DVU2761: DVU2761 - hypothetical protein (TIGR), at 2,869,107 to 2,869,292 DVU2761 DVU2762: DVU2762 - membrane protein, putative (TIGR), at 2,869,357 to 2,870,277 DVU2762 Position (kb) 2869 2870Strain fitness (log2 ratio) -1 0 1 2at 2868.141 kb on + strandat 2868.165 kb on + strandat 2868.170 kb on + strandat 2868.182 kb on + strandat 2868.188 kb on + strandat 2868.189 kb on + strandat 2868.232 kb on - strandat 2868.343 kb on + strandat 2868.358 kb on - strandat 2868.360 kb on + strandat 2868.364 kb on + strandat 2868.539 kb on + strand, within DVU2760at 2868.577 kb on + strand, within DVU2760at 2868.577 kb on + strand, within DVU2760at 2868.669 kb on - strand, within DVU2760at 2868.679 kb on - strand, within DVU2760at 2868.835 kb on - strand, within DVU2760at 2868.923 kb on + strandat 2868.946 kb on - strandat 2868.968 kb on + strandat 2869.007 kb on + strandat 2869.015 kb on - strandat 2869.015 kb on - strandat 2869.015 kb on - strandat 2869.015 kb on - strandat 2869.059 kb on + strandat 2869.064 kb on + strandat 2869.072 kb on - strandat 2869.113 kb on - strandat 2869.115 kb on - strandat 2869.236 kb on - strand, within DVU2761at 2869.329 kb on + strandat 2869.384 kb on - strandat 2869.400 kb on + strandat 2869.400 kb on + strandat 2869.408 kb on - strandat 2869.408 kb on - strandat 2869.410 kb on + strandat 2869.418 kb on - strandat 2869.513 kb on - strand, within DVU2762at 2869.582 kb on + strand, within DVU2762at 2869.612 kb on - strand, within DVU2762at 2869.686 kb on + strand, within DVU2762at 2869.715 kb on + strand, within DVU2762at 2869.715 kb on + strand, within DVU2762at 2869.750 kb on - strand, within DVU2762at 2869.774 kb on + strand, within DVU2762at 2869.774 kb on + strand, within DVU2762at 2869.774 kb on + strand, within DVU2762at 2869.777 kb on - strand, within DVU2762at 2869.794 kb on - strand, within DVU2762at 2869.804 kb on + strand, within DVU2762at 2869.843 kb on - strand, within DVU2762at 2869.888 kb on + strand, within DVU2762at 2869.945 kb on - strand, within DVU2762at 2869.947 kb on + strand, within DVU2762at 2870.086 kb on - strand, within DVU2762at 2870.112 kb on + strand, within DVU2762at 2870.120 kb on - strand, within DVU2762at 2870.152 kb on + strand, within DVU2762

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
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2,868,141 + -1.0
2,868,165 + -0.1
2,868,170 + +0.0
2,868,182 + -0.6
2,868,188 + -1.3
2,868,189 + -0.0
2,868,232 - -0.1
2,868,343 + +0.8
2,868,358 - -0.2
2,868,360 + +0.0
2,868,364 + -0.0
2,868,539 + DVU2760 0.27 -1.4
2,868,577 + DVU2760 0.33 -0.1
2,868,577 + DVU2760 0.33 +0.9
2,868,669 - DVU2760 0.49 -0.1
2,868,679 - DVU2760 0.50 -0.1
2,868,835 - DVU2760 0.76 -0.4
2,868,923 + +1.8
2,868,946 - -0.2
2,868,968 + -0.3
2,869,007 + -0.7
2,869,015 - -0.5
2,869,015 - -1.1
2,869,015 - -1.5
2,869,015 - -0.0
2,869,059 + -0.3
2,869,064 + -0.1
2,869,072 - -0.2
2,869,113 - -1.2
2,869,115 - +0.1
2,869,236 - DVU2761 0.69 -1.3
2,869,329 + -0.7
2,869,384 - +0.6
2,869,400 + +0.1
2,869,400 + +0.0
2,869,408 - -0.8
2,869,408 - +0.2
2,869,410 + +0.5
2,869,418 - -1.4
2,869,513 - DVU2762 0.17 -0.2
2,869,582 + DVU2762 0.24 +0.4
2,869,612 - DVU2762 0.28 -0.1
2,869,686 + DVU2762 0.36 +0.6
2,869,715 + DVU2762 0.39 -0.5
2,869,715 + DVU2762 0.39 -0.1
2,869,750 - DVU2762 0.43 -0.2
2,869,774 + DVU2762 0.45 -0.2
2,869,774 + DVU2762 0.45 -0.8
2,869,774 + DVU2762 0.45 -0.3
2,869,777 - DVU2762 0.46 -0.7
2,869,794 - DVU2762 0.47 +1.0
2,869,804 + DVU2762 0.49 -0.0
2,869,843 - DVU2762 0.53 -0.3
2,869,888 + DVU2762 0.58 -0.4
2,869,945 - DVU2762 0.64 -1.1
2,869,947 + DVU2762 0.64 -1.0
2,870,086 - DVU2762 0.79 -0.4
2,870,112 + DVU2762 0.82 -0.6
2,870,120 - DVU2762 0.83 -0.7
2,870,152 + DVU2762 0.86 -0.9

Or see this region's nucleotide sequence