Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2658

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdacA and DVU2657 are separated by 357 nucleotidesDVU2657 and DVU2658 are separated by 262 nucleotidesDVU2658 and DVU2659 overlap by 4 nucleotides DVU2655: dacA - D-alanyl-D-alanine carboxypeptidase family protein (TIGR), at 2,768,362 to 2,769,687 dacA DVU2657: DVU2657 - 6-pyruvoyl tetrahydrobiopterin synthase, putative (TIGR), at 2,770,045 to 2,770,407 DVU2657 DVU2658: DVU2658 - conserved hypothetical protein (TIGR), at 2,770,670 to 2,771,320 DVU2658 DVU2659: DVU2659 - exsB protein (TIGR), at 2,771,317 to 2,772,045 DVU2659 Position (kb) 2770 2771 2772Strain fitness (log2 ratio) -1 0 1 2at 2769.747 kb on + strandat 2769.783 kb on - strandat 2769.809 kb on - strandat 2769.874 kb on - strandat 2769.899 kb on - strandat 2769.899 kb on - strandat 2769.931 kb on - strandat 2770.071 kb on + strandat 2770.124 kb on + strand, within DVU2657at 2770.171 kb on - strand, within DVU2657at 2770.190 kb on - strand, within DVU2657at 2770.420 kb on - strandat 2770.495 kb on - strandat 2770.525 kb on + strandat 2770.531 kb on + strandat 2770.608 kb on - strandat 2770.628 kb on - strandat 2770.642 kb on - strandat 2770.731 kb on - strandat 2770.863 kb on + strand, within DVU2658at 2770.871 kb on - strand, within DVU2658at 2770.983 kb on - strand, within DVU2658at 2770.983 kb on - strand, within DVU2658at 2771.008 kb on + strand, within DVU2658at 2771.198 kb on + strand, within DVU2658at 2771.446 kb on - strand, within DVU2659at 2771.523 kb on - strand, within DVU2659at 2771.659 kb on - strand, within DVU2659at 2771.738 kb on + strand, within DVU2659at 2771.782 kb on + strand, within DVU2659at 2771.985 kb on - strandat 2772.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
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2,769,747 + -1.4
2,769,783 - +0.3
2,769,809 - -1.2
2,769,874 - -0.7
2,769,899 - +0.2
2,769,899 - +0.1
2,769,931 - -0.6
2,770,071 + +1.6
2,770,124 + DVU2657 0.22 +0.4
2,770,171 - DVU2657 0.35 +0.1
2,770,190 - DVU2657 0.40 -0.6
2,770,420 - -0.7
2,770,495 - -0.3
2,770,525 + -0.2
2,770,531 + +0.8
2,770,608 - -0.2
2,770,628 - -0.2
2,770,642 - -0.6
2,770,731 - -0.5
2,770,863 + DVU2658 0.30 -0.6
2,770,871 - DVU2658 0.31 -0.1
2,770,983 - DVU2658 0.48 +0.4
2,770,983 - DVU2658 0.48 -0.4
2,771,008 + DVU2658 0.52 -1.3
2,771,198 + DVU2658 0.81 -1.0
2,771,446 - DVU2659 0.18 +0.4
2,771,523 - DVU2659 0.28 +0.3
2,771,659 - DVU2659 0.47 -0.6
2,771,738 + DVU2659 0.58 -0.1
2,771,782 + DVU2659 0.64 -0.7
2,771,985 - +2.2
2,772,003 - -0.3

Or see this region's nucleotide sequence