Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2437

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2436 and DVU2437 are separated by 77 nucleotidesDVU2437 and DVU2438 are separated by 0 nucleotides DVU2436: DVU2436 - conserved hypothetical protein (TIGR), at 2,540,394 to 2,541,026 DVU2436 DVU2437: DVU2437 - ABC transporter, permease protein (TIGR), at 2,541,104 to 2,542,324 DVU2437 DVU2438: DVU2438 - ABC transporter, ATP-binding protein, authentic frameshift (TIGR), at 2,542,325 to 2,544,687 DVU2438 Position (kb) 2541 2542 2543Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2540.279 kb on - strandat 2540.338 kb on + strandat 2540.338 kb on + strandat 2540.346 kb on - strandat 2540.346 kb on - strandat 2540.386 kb on - strandat 2540.392 kb on + strandat 2540.480 kb on - strand, within DVU2436at 2540.528 kb on - strand, within DVU2436at 2540.556 kb on + strand, within DVU2436at 2540.732 kb on - strand, within DVU2436at 2540.813 kb on - strand, within DVU2436at 2540.910 kb on + strand, within DVU2436at 2540.966 kb on - strandat 2540.986 kb on - strandat 2541.106 kb on + strandat 2541.167 kb on - strandat 2541.230 kb on + strand, within DVU2437at 2541.239 kb on - strand, within DVU2437at 2541.291 kb on - strand, within DVU2437at 2541.318 kb on + strand, within DVU2437at 2541.326 kb on - strand, within DVU2437at 2541.377 kb on + strand, within DVU2437at 2541.385 kb on - strand, within DVU2437at 2541.388 kb on + strand, within DVU2437at 2541.388 kb on + strand, within DVU2437at 2541.392 kb on - strand, within DVU2437at 2541.396 kb on - strand, within DVU2437at 2541.446 kb on - strand, within DVU2437at 2541.493 kb on + strand, within DVU2437at 2541.522 kb on - strand, within DVU2437at 2541.713 kb on - strand, within DVU2437at 2541.748 kb on - strand, within DVU2437at 2541.770 kb on + strand, within DVU2437at 2541.806 kb on + strand, within DVU2437at 2541.927 kb on + strand, within DVU2437at 2541.927 kb on + strand, within DVU2437at 2541.935 kb on - strand, within DVU2437at 2542.018 kb on + strand, within DVU2437at 2542.027 kb on - strand, within DVU2437at 2542.083 kb on - strand, within DVU2437at 2542.202 kb on + strand, within DVU2437at 2542.227 kb on + strandat 2542.275 kb on + strandat 2542.395 kb on - strandat 2542.744 kb on - strand, within DVU2438at 2542.765 kb on - strand, within DVU2438at 2542.862 kb on - strand, within DVU2438at 2542.923 kb on - strand, within DVU2438at 2543.047 kb on - strand, within DVU2438at 2543.067 kb on + strand, within DVU2438at 2543.067 kb on + strand, within DVU2438at 2543.168 kb on - strand, within DVU2438at 2543.168 kb on - strand, within DVU2438at 2543.298 kb on + strand, within DVU2438

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
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2,540,279 - -0.0
2,540,338 + -0.8
2,540,338 + +0.0
2,540,346 - -0.3
2,540,346 - +1.1
2,540,386 - -0.3
2,540,392 + -0.2
2,540,480 - DVU2436 0.14 -0.0
2,540,528 - DVU2436 0.21 -0.0
2,540,556 + DVU2436 0.26 -0.2
2,540,732 - DVU2436 0.53 -0.8
2,540,813 - DVU2436 0.66 -0.4
2,540,910 + DVU2436 0.82 -0.2
2,540,966 - -0.5
2,540,986 - -0.4
2,541,106 + -0.2
2,541,167 - -0.5
2,541,230 + DVU2437 0.10 -0.7
2,541,239 - DVU2437 0.11 +0.0
2,541,291 - DVU2437 0.15 +0.5
2,541,318 + DVU2437 0.18 +1.9
2,541,326 - DVU2437 0.18 +0.6
2,541,377 + DVU2437 0.22 +0.6
2,541,385 - DVU2437 0.23 -1.6
2,541,388 + DVU2437 0.23 +0.5
2,541,388 + DVU2437 0.23 -0.2
2,541,392 - DVU2437 0.24 -0.3
2,541,396 - DVU2437 0.24 +0.5
2,541,446 - DVU2437 0.28 -0.3
2,541,493 + DVU2437 0.32 +0.0
2,541,522 - DVU2437 0.34 -1.8
2,541,713 - DVU2437 0.50 +0.8
2,541,748 - DVU2437 0.53 -3.5
2,541,770 + DVU2437 0.55 -0.1
2,541,806 + DVU2437 0.57 -0.1
2,541,927 + DVU2437 0.67 -1.2
2,541,927 + DVU2437 0.67 +0.8
2,541,935 - DVU2437 0.68 +0.8
2,542,018 + DVU2437 0.75 -0.4
2,542,027 - DVU2437 0.76 -0.3
2,542,083 - DVU2437 0.80 +0.2
2,542,202 + DVU2437 0.90 -2.2
2,542,227 + +0.1
2,542,275 + -0.9
2,542,395 - -0.6
2,542,744 - DVU2438 0.18 -0.5
2,542,765 - DVU2438 0.19 +0.2
2,542,862 - DVU2438 0.23 +0.4
2,542,923 - DVU2438 0.25 -0.3
2,543,047 - DVU2438 0.31 -1.0
2,543,067 + DVU2438 0.31 +0.1
2,543,067 + DVU2438 0.31 -0.1
2,543,168 - DVU2438 0.36 +0.0
2,543,168 - DVU2438 0.36 -0.1
2,543,298 + DVU2438 0.41 +0.2

Or see this region's nucleotide sequence