Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20145

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09775 and SGL_RS20145 are separated by 264 nucleotidesSGL_RS20145 and SGL_RS09780 are separated by 336 nucleotides SGL_RS09775: SGL_RS09775 - phosphoglucosamine mutase, at 1,680,662 to 1,682,134 _RS09775 SGL_RS20145: SGL_RS20145 - hypothetical protein, at 1,682,399 to 1,682,533 _RS20145 SGL_RS09780: SGL_RS09780 - SDR family oxidoreductase, at 1,682,870 to 1,683,529 _RS09780 Position (kb) 1682 1683Strain fitness (log2 ratio) -1 0 1at 1682.157 kb on + strandat 1682.215 kb on - strandat 1682.234 kb on - strandat 1682.307 kb on - strandat 1682.495 kb on - strand, within SGL_RS20145at 1682.518 kb on - strand, within SGL_RS20145at 1682.570 kb on + strandat 1682.815 kb on - strandat 1683.036 kb on + strand, within SGL_RS09780at 1683.088 kb on + strand, within SGL_RS09780at 1683.156 kb on - strand, within SGL_RS09780at 1683.163 kb on + strand, within SGL_RS09780at 1683.177 kb on - strand, within SGL_RS09780at 1683.304 kb on + strand, within SGL_RS09780at 1683.316 kb on - strand, within SGL_RS09780at 1683.391 kb on + strand, within SGL_RS09780at 1683.410 kb on - strand, within SGL_RS09780at 1683.412 kb on - strand, within SGL_RS09780at 1683.433 kb on - strand, within SGL_RS09780

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,682,157 + -0.6
1,682,215 - -1.5
1,682,234 - -0.6
1,682,307 - -0.9
1,682,495 - SGL_RS20145 0.71 +1.7
1,682,518 - SGL_RS20145 0.88 +0.3
1,682,570 + +0.7
1,682,815 - +0.2
1,683,036 + SGL_RS09780 0.25 -0.1
1,683,088 + SGL_RS09780 0.33 +0.1
1,683,156 - SGL_RS09780 0.43 -0.5
1,683,163 + SGL_RS09780 0.44 +0.3
1,683,177 - SGL_RS09780 0.47 +0.2
1,683,304 + SGL_RS09780 0.66 -0.3
1,683,316 - SGL_RS09780 0.68 -0.0
1,683,391 + SGL_RS09780 0.79 +0.0
1,683,410 - SGL_RS09780 0.82 +0.1
1,683,412 - SGL_RS09780 0.82 -0.4
1,683,433 - SGL_RS09780 0.85 -1.0

Or see this region's nucleotide sequence