Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19910

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11140 and SGL_RS11145 are separated by 359 nucleotidesSGL_RS11145 and SGL_RS19910 are separated by 84 nucleotidesSGL_RS19910 and SGL_RS11155 are separated by 297 nucleotidesSGL_RS11155 and SGL_RS11160 are separated by 159 nucleotides SGL_RS11140: SGL_RS11140 - citramalate synthase, at 1,959,436 to 1,961,079 _RS11140 SGL_RS11145: SGL_RS11145 - ABC transporter, at 1,961,439 to 1,961,600 _RS11145 SGL_RS19910: SGL_RS19910 - DUF29 domain-containing protein, at 1,961,685 to 1,962,068 _RS19910 SGL_RS11155: SGL_RS11155 - hypothetical protein, at 1,962,366 to 1,962,545 _RS11155 SGL_RS11160: SGL_RS11160 - ParA family protein, at 1,962,705 to 1,965,467 _RS11160 Position (kb) 1961 1962 1963Strain fitness (log2 ratio) -1 0 1at 1960.745 kb on + strand, within SGL_RS11140at 1960.867 kb on - strand, within SGL_RS11140at 1961.114 kb on - strandat 1961.224 kb on + strandat 1961.289 kb on - strandat 1961.340 kb on + strandat 1961.838 kb on + strand, within SGL_RS19910at 1961.879 kb on - strand, within SGL_RS19910at 1962.005 kb on + strand, within SGL_RS19910at 1962.013 kb on - strand, within SGL_RS19910at 1962.083 kb on + strandat 1962.241 kb on + strandat 1962.309 kb on - strandat 1962.880 kb on - strandat 1962.937 kb on - strandat 1962.940 kb on - strandat 1963.052 kb on + strand, within SGL_RS11160

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,960,745 + SGL_RS11140 0.80 -0.5
1,960,867 - SGL_RS11140 0.87 -1.4
1,961,114 - -0.2
1,961,224 + +0.3
1,961,289 - +0.3
1,961,340 + -0.8
1,961,838 + SGL_RS19910 0.40 +0.4
1,961,879 - SGL_RS19910 0.51 +0.3
1,962,005 + SGL_RS19910 0.83 -0.6
1,962,013 - SGL_RS19910 0.85 +0.5
1,962,083 + +0.1
1,962,241 + -0.1
1,962,309 - +0.1
1,962,880 - -0.3
1,962,937 - +0.1
1,962,940 - +0.5
1,963,052 + SGL_RS11160 0.13 -0.1

Or see this region's nucleotide sequence