Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19765

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03195 and SGL_RS19760 are separated by 66 nucleotidesSGL_RS19760 and SGL_RS19765 overlap by 32 nucleotidesSGL_RS19765 and SGL_RS03210 are separated by 238 nucleotides SGL_RS03195: SGL_RS03195 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 281,507 to 282,223 _RS03195 SGL_RS19760: SGL_RS19760 - CopG family antitoxin, at 282,290 to 282,541 _RS19760 SGL_RS19765: SGL_RS19765 - BrnT family toxin, at 282,510 to 282,821 _RS19765 SGL_RS03210: SGL_RS03210 - NADP-dependent isocitrate dehydrogenase, at 283,060 to 284,487 _RS03210 Position (kb) 282 283Strain fitness (log2 ratio) -2 -1 0 1at 281.531 kb on + strandat 281.562 kb on + strandat 281.618 kb on - strand, within SGL_RS03195at 281.643 kb on - strand, within SGL_RS03195at 281.681 kb on - strand, within SGL_RS03195at 281.691 kb on - strand, within SGL_RS03195at 281.860 kb on - strand, within SGL_RS03195at 281.873 kb on + strand, within SGL_RS03195at 282.044 kb on + strand, within SGL_RS03195at 282.070 kb on + strand, within SGL_RS03195at 282.174 kb on - strandat 282.563 kb on + strand, within SGL_RS19765at 282.573 kb on - strand, within SGL_RS19765at 282.664 kb on - strand, within SGL_RS19765at 282.879 kb on - strandat 283.391 kb on + strand, within SGL_RS03210at 283.451 kb on + strand, within SGL_RS03210at 283.627 kb on - strand, within SGL_RS03210at 283.783 kb on - strand, within SGL_RS03210

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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281,531 + -0.1
281,562 + +0.1
281,618 - SGL_RS03195 0.15 +0.9
281,643 - SGL_RS03195 0.19 +0.1
281,681 - SGL_RS03195 0.24 -0.8
281,691 - SGL_RS03195 0.26 +0.2
281,860 - SGL_RS03195 0.49 -0.4
281,873 + SGL_RS03195 0.51 -0.3
282,044 + SGL_RS03195 0.75 -0.4
282,070 + SGL_RS03195 0.79 +1.1
282,174 - +0.1
282,563 + SGL_RS19765 0.17 -0.0
282,573 - SGL_RS19765 0.20 +1.2
282,664 - SGL_RS19765 0.49 +0.3
282,879 - -0.0
283,391 + SGL_RS03210 0.23 -0.4
283,451 + SGL_RS03210 0.27 -1.7
283,627 - SGL_RS03210 0.40 -2.0
283,783 - SGL_RS03210 0.51 +0.6

Or see this region's nucleotide sequence