Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19420

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03505 and SGL_RS19420 are separated by 173 nucleotidesSGL_RS19420 and SGL_RS03515 are separated by 577 nucleotides SGL_RS03505: SGL_RS03505 - exopolysaccharide transport family protein, at 345,536 to 347,806 _RS03505 SGL_RS19420: SGL_RS19420 - hypothetical protein, at 347,980 to 348,123 _RS19420 SGL_RS03515: SGL_RS03515 - Uma2 family endonuclease, at 348,701 to 349,429 _RS03515 Position (kb) 347 348 349Strain fitness (log2 ratio) -1 0 1at 347.103 kb on - strand, within SGL_RS03505at 347.336 kb on + strand, within SGL_RS03505at 347.360 kb on - strand, within SGL_RS03505at 347.668 kb on + strandat 347.690 kb on + strandat 347.753 kb on + strandat 347.804 kb on - strandat 347.858 kb on + strandat 347.883 kb on + strandat 347.931 kb on - strandat 347.933 kb on + strandat 347.933 kb on + strandat 347.933 kb on + strandat 347.985 kb on - strandat 347.999 kb on - strand, within SGL_RS19420at 348.102 kb on - strand, within SGL_RS19420at 348.139 kb on + strandat 348.395 kb on - strandat 348.396 kb on + strandat 348.456 kb on + strandat 348.595 kb on + strandat 348.907 kb on - strand, within SGL_RS03515at 348.945 kb on - strand, within SGL_RS03515at 349.006 kb on + strand, within SGL_RS03515

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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347,103 - SGL_RS03505 0.69 +0.5
347,336 + SGL_RS03505 0.79 -0.3
347,360 - SGL_RS03505 0.80 +0.7
347,668 + +0.1
347,690 + +0.2
347,753 + +0.2
347,804 - +0.8
347,858 + +1.0
347,883 + +0.6
347,931 - +0.1
347,933 + +0.4
347,933 + +0.3
347,933 + -0.0
347,985 - +1.3
347,999 - SGL_RS19420 0.13 +0.6
348,102 - SGL_RS19420 0.85 +1.0
348,139 + +0.3
348,395 - +0.7
348,396 + +0.6
348,456 + +0.3
348,595 + +0.5
348,907 - SGL_RS03515 0.28 +0.7
348,945 - SGL_RS03515 0.33 +0.0
349,006 + SGL_RS03515 0.42 -0.2

Or see this region's nucleotide sequence