Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18485

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00290 and SGL_RS18485 are separated by 301 nucleotidesSGL_RS18485 and SGL_RS00295 are separated by 90 nucleotidesSGL_RS00295 and SGL_RS00300 overlap by 17 nucleotidesSGL_RS00300 and SGL_RS00305 are separated by 73 nucleotides SGL_RS00285: SGL_RS00285 - hypothetical protein, at 65,331 to 65,786 _RS00285 SGL_RS00290: SGL_RS00290 - transposase, at 65,758 to 66,480 _RS00290 SGL_RS18485: SGL_RS18485 - HNH endonuclease, at 66,782 to 67,072 _RS18485 SGL_RS00295: SGL_RS00295 - hypothetical protein, at 67,163 to 67,378 _RS00295 SGL_RS00300: SGL_RS00300 - ParA family protein, at 67,362 to 67,976 _RS00300 SGL_RS00305: SGL_RS00305 - ATP-binding protein, at 68,050 to 68,574 _RS00305 Position (kb) 66 67 68Strain fitness (log2 ratio) -1 0 1at 65.814 kb on + strandat 65.815 kb on + strandat 65.835 kb on - strand, within SGL_RS00290at 65.842 kb on - strand, within SGL_RS00290at 65.844 kb on + strand, within SGL_RS00290at 65.852 kb on - strand, within SGL_RS00290at 65.852 kb on - strand, within SGL_RS00290at 65.852 kb on - strand, within SGL_RS00290at 65.915 kb on - strand, within SGL_RS00290at 66.003 kb on + strand, within SGL_RS00290at 66.049 kb on - strand, within SGL_RS00290at 66.076 kb on + strand, within SGL_RS00290at 66.085 kb on - strand, within SGL_RS00290at 66.145 kb on - strand, within SGL_RS00290at 66.162 kb on - strand, within SGL_RS00290at 66.184 kb on - strand, within SGL_RS00290at 66.205 kb on + strand, within SGL_RS00290at 66.213 kb on - strand, within SGL_RS00290at 66.298 kb on - strand, within SGL_RS00290at 66.329 kb on - strand, within SGL_RS00290at 66.372 kb on + strand, within SGL_RS00290at 66.403 kb on + strand, within SGL_RS00290at 66.403 kb on + strand, within SGL_RS00290at 66.415 kb on + strandat 66.483 kb on - strandat 66.588 kb on + strandat 66.628 kb on + strandat 66.637 kb on - strandat 66.820 kb on + strand, within SGL_RS18485at 66.821 kb on - strand, within SGL_RS18485at 66.985 kb on - strand, within SGL_RS18485at 67.030 kb on + strand, within SGL_RS18485at 67.030 kb on + strand, within SGL_RS18485at 67.035 kb on + strand, within SGL_RS18485at 67.038 kb on - strand, within SGL_RS18485at 67.038 kb on - strand, within SGL_RS18485at 67.112 kb on - strandat 67.144 kb on + strandat 67.216 kb on + strand, within SGL_RS00295at 67.261 kb on + strand, within SGL_RS00295at 67.261 kb on + strand, within SGL_RS00295at 67.269 kb on - strand, within SGL_RS00295at 67.335 kb on + strand, within SGL_RS00295at 67.341 kb on + strand, within SGL_RS00295at 67.343 kb on - strand, within SGL_RS00295at 67.349 kb on - strand, within SGL_RS00295at 67.370 kb on - strandat 67.451 kb on - strand, within SGL_RS00300at 67.456 kb on + strand, within SGL_RS00300at 67.477 kb on + strand, within SGL_RS00300at 67.477 kb on + strand, within SGL_RS00300at 67.477 kb on + strand, within SGL_RS00300at 67.548 kb on + strand, within SGL_RS00300at 67.549 kb on - strand, within SGL_RS00300at 67.573 kb on + strand, within SGL_RS00300at 67.581 kb on - strand, within SGL_RS00300at 67.581 kb on - strand, within SGL_RS00300at 67.591 kb on - strand, within SGL_RS00300at 67.620 kb on - strand, within SGL_RS00300at 67.645 kb on - strand, within SGL_RS00300at 67.658 kb on - strand, within SGL_RS00300at 67.690 kb on - strand, within SGL_RS00300at 67.783 kb on + strand, within SGL_RS00300at 67.857 kb on + strand, within SGL_RS00300at 67.861 kb on + strand, within SGL_RS00300at 67.862 kb on + strand, within SGL_RS00300at 67.947 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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65,814 + -0.1
65,815 + +0.5
65,835 - SGL_RS00290 0.11 +0.1
65,842 - SGL_RS00290 0.12 -0.5
65,844 + SGL_RS00290 0.12 +0.0
65,852 - SGL_RS00290 0.13 -0.6
65,852 - SGL_RS00290 0.13 +0.3
65,852 - SGL_RS00290 0.13 -0.1
65,915 - SGL_RS00290 0.22 +0.1
66,003 + SGL_RS00290 0.34 -0.4
66,049 - SGL_RS00290 0.40 +1.1
66,076 + SGL_RS00290 0.44 +1.1
66,085 - SGL_RS00290 0.45 +0.1
66,145 - SGL_RS00290 0.54 +0.1
66,162 - SGL_RS00290 0.56 -0.9
66,184 - SGL_RS00290 0.59 +0.6
66,205 + SGL_RS00290 0.62 -0.3
66,213 - SGL_RS00290 0.63 -1.0
66,298 - SGL_RS00290 0.75 -0.2
66,329 - SGL_RS00290 0.79 -0.3
66,372 + SGL_RS00290 0.85 +0.1
66,403 + SGL_RS00290 0.89 -0.2
66,403 + SGL_RS00290 0.89 -0.0
66,415 + +0.5
66,483 - -0.2
66,588 + -0.1
66,628 + +0.3
66,637 - +0.1
66,820 + SGL_RS18485 0.13 +1.1
66,821 - SGL_RS18485 0.13 +0.2
66,985 - SGL_RS18485 0.70 -0.3
67,030 + SGL_RS18485 0.85 +1.0
67,030 + SGL_RS18485 0.85 +0.2
67,035 + SGL_RS18485 0.87 +0.1
67,038 - SGL_RS18485 0.88 -0.3
67,038 - SGL_RS18485 0.88 +0.1
67,112 - +0.2
67,144 + +0.6
67,216 + SGL_RS00295 0.25 +0.2
67,261 + SGL_RS00295 0.45 -1.6
67,261 + SGL_RS00295 0.45 -0.8
67,269 - SGL_RS00295 0.49 -0.2
67,335 + SGL_RS00295 0.80 +0.4
67,341 + SGL_RS00295 0.82 -0.7
67,343 - SGL_RS00295 0.83 -0.1
67,349 - SGL_RS00295 0.86 -0.5
67,370 - -0.4
67,451 - SGL_RS00300 0.14 -0.2
67,456 + SGL_RS00300 0.15 -0.3
67,477 + SGL_RS00300 0.19 +0.4
67,477 + SGL_RS00300 0.19 +0.5
67,477 + SGL_RS00300 0.19 -0.3
67,548 + SGL_RS00300 0.30 +0.2
67,549 - SGL_RS00300 0.30 -0.1
67,573 + SGL_RS00300 0.34 -1.2
67,581 - SGL_RS00300 0.36 -0.2
67,581 - SGL_RS00300 0.36 +0.5
67,591 - SGL_RS00300 0.37 -0.4
67,620 - SGL_RS00300 0.42 +0.1
67,645 - SGL_RS00300 0.46 -0.0
67,658 - SGL_RS00300 0.48 -0.3
67,690 - SGL_RS00300 0.53 +0.2
67,783 + SGL_RS00300 0.68 -0.0
67,857 + SGL_RS00300 0.80 +0.4
67,861 + SGL_RS00300 0.81 +0.2
67,862 + SGL_RS00300 0.81 +0.1
67,947 + +0.7

Or see this region's nucleotide sequence