Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18250 and SGL_RS18255 overlap by 4 nucleotides SGL_RS18255 and SGL_RS18260 overlap by 14 nucleotides SGL_RS18260 and SGL_RS18270 are separated by 298 nucleotides
SGL_RS18250: SGL_RS18250 - ribonucleotide-diphosphate reductase subunit beta, at 3,543,143 to 3,544,210
_RS18250
SGL_RS18255: SGL_RS18255 - carbamate kinase, at 3,544,207 to 3,545,133
_RS18255
SGL_RS18260: SGL_RS18260 - cyclic 2,3-diphosphoglycerate synthase, at 3,545,120 to 3,546,493
_RS18260
SGL_RS18270: SGL_RS18270 - family 10 glycosylhydrolase, at 3,546,792 to 3,548,315
_RS18270
Position (kb)
3545
3546
3547 Strain fitness (log2 ratio)
-1
0
1 at 3544.254 kb on - strand at 3544.284 kb on + strand at 3544.321 kb on + strand, within SGL_RS18255 at 3544.441 kb on + strand, within SGL_RS18255 at 3544.517 kb on - strand, within SGL_RS18255 at 3544.578 kb on + strand, within SGL_RS18255 at 3544.578 kb on + strand, within SGL_RS18255 at 3544.600 kb on + strand, within SGL_RS18255 at 3544.620 kb on + strand, within SGL_RS18255 at 3544.699 kb on - strand, within SGL_RS18255 at 3544.726 kb on + strand, within SGL_RS18255 at 3544.734 kb on - strand, within SGL_RS18255 at 3544.735 kb on - strand, within SGL_RS18255 at 3544.926 kb on + strand, within SGL_RS18255 at 3544.990 kb on - strand, within SGL_RS18255 at 3545.160 kb on + strand at 3545.266 kb on - strand, within SGL_RS18260 at 3545.422 kb on + strand, within SGL_RS18260 at 3545.564 kb on + strand, within SGL_RS18260 at 3545.688 kb on + strand, within SGL_RS18260 at 3545.759 kb on + strand, within SGL_RS18260 at 3545.925 kb on - strand, within SGL_RS18260 at 3545.944 kb on - strand, within SGL_RS18260 at 3546.001 kb on - strand, within SGL_RS18260 at 3546.029 kb on + strand, within SGL_RS18260 at 3546.198 kb on + strand, within SGL_RS18260 at 3546.232 kb on + strand, within SGL_RS18260 at 3546.297 kb on - strand, within SGL_RS18260 at 3546.504 kb on - strand at 3546.519 kb on - strand at 3546.536 kb on + strand at 3546.544 kb on - strand at 3547.048 kb on + strand, within SGL_RS18270
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 3,544,254 - -0.2 3,544,284 + +0.0 3,544,321 + SGL_RS18255 0.12 -0.2 3,544,441 + SGL_RS18255 0.25 +0.2 3,544,517 - SGL_RS18255 0.33 +0.3 3,544,578 + SGL_RS18255 0.40 +0.1 3,544,578 + SGL_RS18255 0.40 -0.5 3,544,600 + SGL_RS18255 0.42 -0.3 3,544,620 + SGL_RS18255 0.45 +0.2 3,544,699 - SGL_RS18255 0.53 -0.1 3,544,726 + SGL_RS18255 0.56 -0.4 3,544,734 - SGL_RS18255 0.57 -0.1 3,544,735 - SGL_RS18255 0.57 +0.3 3,544,926 + SGL_RS18255 0.78 -0.1 3,544,990 - SGL_RS18255 0.84 -0.3 3,545,160 + -0.2 3,545,266 - SGL_RS18260 0.11 +0.6 3,545,422 + SGL_RS18260 0.22 +0.6 3,545,564 + SGL_RS18260 0.32 -0.1 3,545,688 + SGL_RS18260 0.41 +0.5 3,545,759 + SGL_RS18260 0.47 +0.0 3,545,925 - SGL_RS18260 0.59 +0.4 3,545,944 - SGL_RS18260 0.60 -0.0 3,546,001 - SGL_RS18260 0.64 +0.0 3,546,029 + SGL_RS18260 0.66 -0.2 3,546,198 + SGL_RS18260 0.78 +0.1 3,546,232 + SGL_RS18260 0.81 +0.8 3,546,297 - SGL_RS18260 0.86 +0.4 3,546,504 - +1.3 3,546,519 - -0.1 3,546,536 + -0.6 3,546,544 - +0.4 3,547,048 + SGL_RS18270 0.17 -1.4
Or see this region's nucleotide sequence