Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18260

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18250 and SGL_RS18255 overlap by 4 nucleotidesSGL_RS18255 and SGL_RS18260 overlap by 14 nucleotidesSGL_RS18260 and SGL_RS18270 are separated by 298 nucleotides SGL_RS18250: SGL_RS18250 - ribonucleotide-diphosphate reductase subunit beta, at 3,543,143 to 3,544,210 _RS18250 SGL_RS18255: SGL_RS18255 - carbamate kinase, at 3,544,207 to 3,545,133 _RS18255 SGL_RS18260: SGL_RS18260 - cyclic 2,3-diphosphoglycerate synthase, at 3,545,120 to 3,546,493 _RS18260 SGL_RS18270: SGL_RS18270 - family 10 glycosylhydrolase, at 3,546,792 to 3,548,315 _RS18270 Position (kb) 3545 3546 3547Strain fitness (log2 ratio) -1 0 1at 3544.254 kb on - strandat 3544.284 kb on + strandat 3544.321 kb on + strand, within SGL_RS18255at 3544.441 kb on + strand, within SGL_RS18255at 3544.517 kb on - strand, within SGL_RS18255at 3544.578 kb on + strand, within SGL_RS18255at 3544.578 kb on + strand, within SGL_RS18255at 3544.600 kb on + strand, within SGL_RS18255at 3544.620 kb on + strand, within SGL_RS18255at 3544.699 kb on - strand, within SGL_RS18255at 3544.726 kb on + strand, within SGL_RS18255at 3544.734 kb on - strand, within SGL_RS18255at 3544.735 kb on - strand, within SGL_RS18255at 3544.926 kb on + strand, within SGL_RS18255at 3544.990 kb on - strand, within SGL_RS18255at 3545.160 kb on + strandat 3545.266 kb on - strand, within SGL_RS18260at 3545.422 kb on + strand, within SGL_RS18260at 3545.564 kb on + strand, within SGL_RS18260at 3545.688 kb on + strand, within SGL_RS18260at 3545.759 kb on + strand, within SGL_RS18260at 3545.925 kb on - strand, within SGL_RS18260at 3545.944 kb on - strand, within SGL_RS18260at 3546.001 kb on - strand, within SGL_RS18260at 3546.029 kb on + strand, within SGL_RS18260at 3546.198 kb on + strand, within SGL_RS18260at 3546.232 kb on + strand, within SGL_RS18260at 3546.297 kb on - strand, within SGL_RS18260at 3546.504 kb on - strandat 3546.519 kb on - strandat 3546.536 kb on + strandat 3546.544 kb on - strandat 3547.048 kb on + strand, within SGL_RS18270

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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3,544,254 - -0.2
3,544,284 + +0.0
3,544,321 + SGL_RS18255 0.12 -0.2
3,544,441 + SGL_RS18255 0.25 +0.2
3,544,517 - SGL_RS18255 0.33 +0.3
3,544,578 + SGL_RS18255 0.40 +0.1
3,544,578 + SGL_RS18255 0.40 -0.5
3,544,600 + SGL_RS18255 0.42 -0.3
3,544,620 + SGL_RS18255 0.45 +0.2
3,544,699 - SGL_RS18255 0.53 -0.1
3,544,726 + SGL_RS18255 0.56 -0.4
3,544,734 - SGL_RS18255 0.57 -0.1
3,544,735 - SGL_RS18255 0.57 +0.3
3,544,926 + SGL_RS18255 0.78 -0.1
3,544,990 - SGL_RS18255 0.84 -0.3
3,545,160 + -0.2
3,545,266 - SGL_RS18260 0.11 +0.6
3,545,422 + SGL_RS18260 0.22 +0.6
3,545,564 + SGL_RS18260 0.32 -0.1
3,545,688 + SGL_RS18260 0.41 +0.5
3,545,759 + SGL_RS18260 0.47 +0.0
3,545,925 - SGL_RS18260 0.59 +0.4
3,545,944 - SGL_RS18260 0.60 -0.0
3,546,001 - SGL_RS18260 0.64 +0.0
3,546,029 + SGL_RS18260 0.66 -0.2
3,546,198 + SGL_RS18260 0.78 +0.1
3,546,232 + SGL_RS18260 0.81 +0.8
3,546,297 - SGL_RS18260 0.86 +0.4
3,546,504 - +1.3
3,546,519 - -0.1
3,546,536 + -0.6
3,546,544 - +0.4
3,547,048 + SGL_RS18270 0.17 -1.4

Or see this region's nucleotide sequence