Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16650

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16645 and SGL_RS16650 overlap by 1 nucleotidesSGL_RS16650 and SGL_RS16655 overlap by 4 nucleotides SGL_RS16645: SGL_RS16645 - sugar ABC transporter permease, at 3,189,797 to 3,190,768 _RS16645 SGL_RS16650: SGL_RS16650 - carbohydrate ABC transporter permease, at 3,190,768 to 3,191,664 _RS16650 SGL_RS16655: SGL_RS16655 - phytoene/squalene synthase family protein, at 3,191,661 to 3,192,476 _RS16655 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -1 0 1 2 3at 3189.930 kb on - strand, within SGL_RS16645at 3190.122 kb on - strand, within SGL_RS16645at 3190.136 kb on - strand, within SGL_RS16645at 3190.222 kb on - strand, within SGL_RS16645at 3190.313 kb on + strand, within SGL_RS16645at 3190.430 kb on + strand, within SGL_RS16645at 3190.453 kb on + strand, within SGL_RS16645at 3190.532 kb on - strand, within SGL_RS16645at 3190.855 kb on + strandat 3190.889 kb on + strand, within SGL_RS16650at 3190.945 kb on - strand, within SGL_RS16650at 3190.992 kb on + strand, within SGL_RS16650at 3191.221 kb on + strand, within SGL_RS16650at 3191.250 kb on + strand, within SGL_RS16650at 3191.555 kb on - strand, within SGL_RS16650at 3191.590 kb on - strandat 3191.689 kb on + strandat 3191.716 kb on + strandat 3191.724 kb on - strandat 3191.943 kb on - strand, within SGL_RS16655at 3191.981 kb on + strand, within SGL_RS16655at 3192.185 kb on + strand, within SGL_RS16655at 3192.275 kb on + strand, within SGL_RS16655at 3192.523 kb on - strandat 3192.528 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
remove
3,189,930 - SGL_RS16645 0.14 +0.5
3,190,122 - SGL_RS16645 0.33 -0.0
3,190,136 - SGL_RS16645 0.35 -0.0
3,190,222 - SGL_RS16645 0.44 -0.0
3,190,313 + SGL_RS16645 0.53 -0.2
3,190,430 + SGL_RS16645 0.65 -0.5
3,190,453 + SGL_RS16645 0.67 -0.4
3,190,532 - SGL_RS16645 0.76 +1.0
3,190,855 + +0.2
3,190,889 + SGL_RS16650 0.13 +0.2
3,190,945 - SGL_RS16650 0.20 +0.9
3,190,992 + SGL_RS16650 0.25 +0.0
3,191,221 + SGL_RS16650 0.51 -0.5
3,191,250 + SGL_RS16650 0.54 +0.3
3,191,555 - SGL_RS16650 0.88 +1.2
3,191,590 - +0.1
3,191,689 + -1.1
3,191,716 + +2.9
3,191,724 - -0.1
3,191,943 - SGL_RS16655 0.35 -1.0
3,191,981 + SGL_RS16655 0.39 +1.2
3,192,185 + SGL_RS16655 0.64 +1.3
3,192,275 + SGL_RS16655 0.75 +0.6
3,192,523 - +1.3
3,192,528 - -0.1

Or see this region's nucleotide sequence