Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16070

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16065 and SGL_RS16070 are separated by 79 nucleotidesSGL_RS16070 and SGL_RS16075 are separated by 114 nucleotides SGL_RS16065: SGL_RS16065 - CusA/CzcA family heavy metal efflux RND transporter, at 3,051,772 to 3,054,936 _RS16065 SGL_RS16070: SGL_RS16070 - glycoside hydrolase family protein, at 3,055,016 to 3,055,699 _RS16070 SGL_RS16075: SGL_RS16075 - MFS transporter, at 3,055,814 to 3,057,151 _RS16075 Position (kb) 3055 3056Strain fitness (log2 ratio) -2 -1 0 1at 3054.090 kb on + strand, within SGL_RS16065at 3054.201 kb on + strand, within SGL_RS16065at 3054.420 kb on - strand, within SGL_RS16065at 3054.473 kb on + strand, within SGL_RS16065at 3054.548 kb on + strand, within SGL_RS16065at 3054.558 kb on + strand, within SGL_RS16065at 3054.579 kb on - strand, within SGL_RS16065at 3054.581 kb on + strand, within SGL_RS16065at 3054.589 kb on - strand, within SGL_RS16065at 3054.661 kb on - strandat 3054.666 kb on + strandat 3054.700 kb on + strandat 3054.708 kb on - strandat 3054.822 kb on - strandat 3054.869 kb on + strandat 3055.512 kb on + strand, within SGL_RS16070at 3055.553 kb on + strand, within SGL_RS16070at 3055.556 kb on - strand, within SGL_RS16070at 3055.865 kb on + strandat 3055.867 kb on + strandat 3055.867 kb on + strandat 3055.875 kb on - strandat 3055.875 kb on - strandat 3055.875 kb on - strandat 3055.904 kb on + strandat 3055.904 kb on + strandat 3055.912 kb on - strandat 3055.912 kb on - strandat 3055.912 kb on - strandat 3055.914 kb on + strandat 3055.915 kb on + strandat 3055.917 kb on - strandat 3055.961 kb on + strand, within SGL_RS16075at 3055.969 kb on - strand, within SGL_RS16075at 3055.980 kb on - strand, within SGL_RS16075at 3055.987 kb on - strand, within SGL_RS16075at 3055.994 kb on - strand, within SGL_RS16075at 3056.006 kb on + strand, within SGL_RS16075at 3056.026 kb on - strand, within SGL_RS16075at 3056.029 kb on + strand, within SGL_RS16075at 3056.078 kb on - strand, within SGL_RS16075at 3056.078 kb on - strand, within SGL_RS16075at 3056.094 kb on - strand, within SGL_RS16075at 3056.116 kb on + strand, within SGL_RS16075at 3056.117 kb on + strand, within SGL_RS16075at 3056.182 kb on + strand, within SGL_RS16075at 3056.195 kb on + strand, within SGL_RS16075at 3056.240 kb on + strand, within SGL_RS16075at 3056.240 kb on + strand, within SGL_RS16075at 3056.248 kb on - strand, within SGL_RS16075at 3056.248 kb on - strand, within SGL_RS16075at 3056.294 kb on - strand, within SGL_RS16075at 3056.298 kb on - strand, within SGL_RS16075at 3056.418 kb on - strand, within SGL_RS16075at 3056.428 kb on - strand, within SGL_RS16075at 3056.529 kb on - strand, within SGL_RS16075at 3056.582 kb on - strand, within SGL_RS16075at 3056.653 kb on + strand, within SGL_RS16075

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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3,054,090 + SGL_RS16065 0.73 +0.5
3,054,201 + SGL_RS16065 0.77 -0.2
3,054,420 - SGL_RS16065 0.84 -0.2
3,054,473 + SGL_RS16065 0.85 -1.0
3,054,548 + SGL_RS16065 0.88 -0.8
3,054,558 + SGL_RS16065 0.88 +0.1
3,054,579 - SGL_RS16065 0.89 +0.3
3,054,581 + SGL_RS16065 0.89 +0.0
3,054,589 - SGL_RS16065 0.89 +0.1
3,054,661 - -0.2
3,054,666 + -0.8
3,054,700 + +0.3
3,054,708 - +0.2
3,054,822 - +0.1
3,054,869 + -0.4
3,055,512 + SGL_RS16070 0.73 +0.5
3,055,553 + SGL_RS16070 0.79 +0.1
3,055,556 - SGL_RS16070 0.79 +0.7
3,055,865 + -0.0
3,055,867 + +0.3
3,055,867 + -0.3
3,055,875 - -0.7
3,055,875 - +0.4
3,055,875 - -0.1
3,055,904 + -0.2
3,055,904 + -1.8
3,055,912 - +0.3
3,055,912 - +1.4
3,055,912 - +0.5
3,055,914 + +0.1
3,055,915 + -0.2
3,055,917 - +0.0
3,055,961 + SGL_RS16075 0.11 -0.3
3,055,969 - SGL_RS16075 0.12 -0.2
3,055,980 - SGL_RS16075 0.12 +0.2
3,055,987 - SGL_RS16075 0.13 -0.0
3,055,994 - SGL_RS16075 0.13 +0.2
3,056,006 + SGL_RS16075 0.14 +0.0
3,056,026 - SGL_RS16075 0.16 -0.2
3,056,029 + SGL_RS16075 0.16 -0.8
3,056,078 - SGL_RS16075 0.20 +0.6
3,056,078 - SGL_RS16075 0.20 -0.1
3,056,094 - SGL_RS16075 0.21 +0.0
3,056,116 + SGL_RS16075 0.23 +0.1
3,056,117 + SGL_RS16075 0.23 -0.1
3,056,182 + SGL_RS16075 0.28 +0.1
3,056,195 + SGL_RS16075 0.28 +0.6
3,056,240 + SGL_RS16075 0.32 -0.0
3,056,240 + SGL_RS16075 0.32 -0.5
3,056,248 - SGL_RS16075 0.32 -0.0
3,056,248 - SGL_RS16075 0.32 +1.3
3,056,294 - SGL_RS16075 0.36 -0.1
3,056,298 - SGL_RS16075 0.36 +0.1
3,056,418 - SGL_RS16075 0.45 -0.1
3,056,428 - SGL_RS16075 0.46 -0.5
3,056,529 - SGL_RS16075 0.53 +0.3
3,056,582 - SGL_RS16075 0.57 +0.1
3,056,653 + SGL_RS16075 0.63 +0.5

Or see this region's nucleotide sequence