Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16065 and SGL_RS16070 are separated by 79 nucleotides SGL_RS16070 and SGL_RS16075 are separated by 114 nucleotides
SGL_RS16065: SGL_RS16065 - CusA/CzcA family heavy metal efflux RND transporter, at 3,051,772 to 3,054,936
_RS16065
SGL_RS16070: SGL_RS16070 - glycoside hydrolase family protein, at 3,055,016 to 3,055,699
_RS16070
SGL_RS16075: SGL_RS16075 - MFS transporter, at 3,055,814 to 3,057,151
_RS16075
Position (kb)
3055
3056 Strain fitness (log2 ratio)
-2
-1
0
1 at 3054.090 kb on + strand, within SGL_RS16065 at 3054.201 kb on + strand, within SGL_RS16065 at 3054.420 kb on - strand, within SGL_RS16065 at 3054.473 kb on + strand, within SGL_RS16065 at 3054.548 kb on + strand, within SGL_RS16065 at 3054.558 kb on + strand, within SGL_RS16065 at 3054.579 kb on - strand, within SGL_RS16065 at 3054.581 kb on + strand, within SGL_RS16065 at 3054.589 kb on - strand, within SGL_RS16065 at 3054.661 kb on - strand at 3054.666 kb on + strand at 3054.700 kb on + strand at 3054.708 kb on - strand at 3054.822 kb on - strand at 3054.869 kb on + strand at 3055.512 kb on + strand, within SGL_RS16070 at 3055.553 kb on + strand, within SGL_RS16070 at 3055.556 kb on - strand, within SGL_RS16070 at 3055.865 kb on + strand at 3055.867 kb on + strand at 3055.867 kb on + strand at 3055.875 kb on - strand at 3055.875 kb on - strand at 3055.875 kb on - strand at 3055.904 kb on + strand at 3055.904 kb on + strand at 3055.912 kb on - strand at 3055.912 kb on - strand at 3055.912 kb on - strand at 3055.914 kb on + strand at 3055.915 kb on + strand at 3055.917 kb on - strand at 3055.961 kb on + strand, within SGL_RS16075 at 3055.969 kb on - strand, within SGL_RS16075 at 3055.980 kb on - strand, within SGL_RS16075 at 3055.987 kb on - strand, within SGL_RS16075 at 3055.994 kb on - strand, within SGL_RS16075 at 3056.006 kb on + strand, within SGL_RS16075 at 3056.026 kb on - strand, within SGL_RS16075 at 3056.029 kb on + strand, within SGL_RS16075 at 3056.078 kb on - strand, within SGL_RS16075 at 3056.078 kb on - strand, within SGL_RS16075 at 3056.094 kb on - strand, within SGL_RS16075 at 3056.116 kb on + strand, within SGL_RS16075 at 3056.117 kb on + strand, within SGL_RS16075 at 3056.182 kb on + strand, within SGL_RS16075 at 3056.195 kb on + strand, within SGL_RS16075 at 3056.240 kb on + strand, within SGL_RS16075 at 3056.240 kb on + strand, within SGL_RS16075 at 3056.248 kb on - strand, within SGL_RS16075 at 3056.248 kb on - strand, within SGL_RS16075 at 3056.294 kb on - strand, within SGL_RS16075 at 3056.298 kb on - strand, within SGL_RS16075 at 3056.418 kb on - strand, within SGL_RS16075 at 3056.428 kb on - strand, within SGL_RS16075 at 3056.529 kb on - strand, within SGL_RS16075 at 3056.582 kb on - strand, within SGL_RS16075 at 3056.653 kb on + strand, within SGL_RS16075
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 3,054,090 + SGL_RS16065 0.73 +0.5 3,054,201 + SGL_RS16065 0.77 -0.2 3,054,420 - SGL_RS16065 0.84 -0.2 3,054,473 + SGL_RS16065 0.85 -1.0 3,054,548 + SGL_RS16065 0.88 -0.8 3,054,558 + SGL_RS16065 0.88 +0.1 3,054,579 - SGL_RS16065 0.89 +0.3 3,054,581 + SGL_RS16065 0.89 +0.0 3,054,589 - SGL_RS16065 0.89 +0.1 3,054,661 - -0.2 3,054,666 + -0.8 3,054,700 + +0.3 3,054,708 - +0.2 3,054,822 - +0.1 3,054,869 + -0.4 3,055,512 + SGL_RS16070 0.73 +0.5 3,055,553 + SGL_RS16070 0.79 +0.1 3,055,556 - SGL_RS16070 0.79 +0.7 3,055,865 + -0.0 3,055,867 + +0.3 3,055,867 + -0.3 3,055,875 - -0.7 3,055,875 - +0.4 3,055,875 - -0.1 3,055,904 + -0.2 3,055,904 + -1.8 3,055,912 - +0.3 3,055,912 - +1.4 3,055,912 - +0.5 3,055,914 + +0.1 3,055,915 + -0.2 3,055,917 - +0.0 3,055,961 + SGL_RS16075 0.11 -0.3 3,055,969 - SGL_RS16075 0.12 -0.2 3,055,980 - SGL_RS16075 0.12 +0.2 3,055,987 - SGL_RS16075 0.13 -0.0 3,055,994 - SGL_RS16075 0.13 +0.2 3,056,006 + SGL_RS16075 0.14 +0.0 3,056,026 - SGL_RS16075 0.16 -0.2 3,056,029 + SGL_RS16075 0.16 -0.8 3,056,078 - SGL_RS16075 0.20 +0.6 3,056,078 - SGL_RS16075 0.20 -0.1 3,056,094 - SGL_RS16075 0.21 +0.0 3,056,116 + SGL_RS16075 0.23 +0.1 3,056,117 + SGL_RS16075 0.23 -0.1 3,056,182 + SGL_RS16075 0.28 +0.1 3,056,195 + SGL_RS16075 0.28 +0.6 3,056,240 + SGL_RS16075 0.32 -0.0 3,056,240 + SGL_RS16075 0.32 -0.5 3,056,248 - SGL_RS16075 0.32 -0.0 3,056,248 - SGL_RS16075 0.32 +1.3 3,056,294 - SGL_RS16075 0.36 -0.1 3,056,298 - SGL_RS16075 0.36 +0.1 3,056,418 - SGL_RS16075 0.45 -0.1 3,056,428 - SGL_RS16075 0.46 -0.5 3,056,529 - SGL_RS16075 0.53 +0.3 3,056,582 - SGL_RS16075 0.57 +0.1 3,056,653 + SGL_RS16075 0.63 +0.5
Or see this region's nucleotide sequence