Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15280 and SGL_RS15285 are separated by 109 nucleotides SGL_RS15285 and SGL_RS15290 are separated by 216 nucleotides SGL_RS15290 and SGL_RS15295 are separated by 222 nucleotides
SGL_RS15280: SGL_RS15280 - HAD family hydrolase, at 2,879,286 to 2,879,855
_RS15280
SGL_RS15285: SGL_RS15285 - D-sedoheptulose 7-phosphate isomerase, at 2,879,965 to 2,880,549
_RS15285
SGL_RS15290: SGL_RS15290 - 6-carboxytetrahydropterin synthase QueD, at 2,880,766 to 2,881,155
_RS15290
SGL_RS15295: SGL_RS15295 - GspE/PulE family protein, at 2,881,378 to 2,883,819
_RS15295
Position (kb)
2880
2881
2882 Strain fitness (log2 ratio)
-1
0
1 at 2879.925 kb on + strand at 2880.731 kb on + strand at 2880.746 kb on - strand at 2880.802 kb on + strand at 2880.934 kb on - strand, within SGL_RS15290 at 2880.980 kb on + strand, within SGL_RS15290 at 2880.998 kb on - strand, within SGL_RS15290 at 2881.011 kb on - strand, within SGL_RS15290 at 2881.044 kb on - strand, within SGL_RS15290 at 2881.103 kb on + strand, within SGL_RS15290 at 2881.337 kb on - strand at 2881.337 kb on - strand at 2881.345 kb on - strand at 2881.383 kb on - strand at 2881.652 kb on + strand, within SGL_RS15295 at 2881.652 kb on - strand, within SGL_RS15295 at 2881.652 kb on - strand, within SGL_RS15295 at 2881.712 kb on + strand, within SGL_RS15295 at 2881.721 kb on - strand, within SGL_RS15295 at 2881.831 kb on - strand, within SGL_RS15295 at 2881.831 kb on - strand, within SGL_RS15295 at 2881.831 kb on - strand, within SGL_RS15295 at 2881.838 kb on + strand, within SGL_RS15295 at 2882.028 kb on - strand, within SGL_RS15295 at 2882.094 kb on + strand, within SGL_RS15295 at 2882.149 kb on - strand, within SGL_RS15295
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 2,879,925 + -0.0 2,880,731 + -0.2 2,880,746 - +0.1 2,880,802 + +0.3 2,880,934 - SGL_RS15290 0.43 +0.4 2,880,980 + SGL_RS15290 0.55 +1.2 2,880,998 - SGL_RS15290 0.59 +1.2 2,881,011 - SGL_RS15290 0.63 -0.3 2,881,044 - SGL_RS15290 0.71 +0.1 2,881,103 + SGL_RS15290 0.86 +0.0 2,881,337 - -0.8 2,881,337 - +0.0 2,881,345 - +0.0 2,881,383 - -0.0 2,881,652 + SGL_RS15295 0.11 +0.3 2,881,652 - SGL_RS15295 0.11 -0.2 2,881,652 - SGL_RS15295 0.11 +0.2 2,881,712 + SGL_RS15295 0.14 -0.8 2,881,721 - SGL_RS15295 0.14 +0.3 2,881,831 - SGL_RS15295 0.19 +0.7 2,881,831 - SGL_RS15295 0.19 +0.2 2,881,831 - SGL_RS15295 0.19 -0.1 2,881,838 + SGL_RS15295 0.19 +0.6 2,882,028 - SGL_RS15295 0.27 +0.1 2,882,094 + SGL_RS15295 0.29 +0.3 2,882,149 - SGL_RS15295 0.32 +0.1
Or see this region's nucleotide sequence