Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14635 and SGL_RS14640 are separated by 137 nucleotides SGL_RS14640 and SGL_RS14645 are separated by 159 nucleotides SGL_RS14645 and SGL_RS14650 are separated by 2 nucleotides SGL_RS14650 and SGL_RS14655 are separated by 15 nucleotides
SGL_RS14635: SGL_RS14635 - ABC transporter ATP-binding protein/permease, at 2,735,806 to 2,737,791
_RS14635
SGL_RS14640: SGL_RS14640 - hypothetical protein, at 2,737,929 to 2,738,552
_RS14640
SGL_RS14645: SGL_RS14645 - type II toxin-antitoxin system HicB family antitoxin, at 2,738,712 to 2,738,915
_RS14645
SGL_RS14650: SGL_RS14650 - type II toxin-antitoxin system HicA family toxin, at 2,738,918 to 2,739,133
_RS14650
SGL_RS14655: SGL_RS14655 - efflux RND transporter periplasmic adaptor subunit, at 2,739,149 to 2,740,654
_RS14655
Position (kb)
2737
2738
2739 Strain fitness (log2 ratio)
-2
-1
0
1 at 2736.958 kb on + strand, within SGL_RS14635 at 2736.958 kb on + strand, within SGL_RS14635 at 2737.336 kb on + strand, within SGL_RS14635 at 2737.471 kb on + strand, within SGL_RS14635 at 2737.553 kb on + strand, within SGL_RS14635 at 2737.561 kb on - strand, within SGL_RS14635 at 2737.600 kb on + strand at 2738.339 kb on + strand, within SGL_RS14640 at 2739.022 kb on - strand, within SGL_RS14650 at 2739.022 kb on - strand, within SGL_RS14650 at 2739.187 kb on - strand at 2739.351 kb on + strand, within SGL_RS14655 at 2739.351 kb on + strand, within SGL_RS14655 at 2739.354 kb on - strand, within SGL_RS14655
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 2,736,958 + SGL_RS14635 0.58 +0.6 2,736,958 + SGL_RS14635 0.58 +0.3 2,737,336 + SGL_RS14635 0.77 -1.9 2,737,471 + SGL_RS14635 0.84 +0.2 2,737,553 + SGL_RS14635 0.88 +0.0 2,737,561 - SGL_RS14635 0.88 +0.7 2,737,600 + -0.2 2,738,339 + SGL_RS14640 0.66 +0.7 2,739,022 - SGL_RS14650 0.48 -0.0 2,739,022 - SGL_RS14650 0.48 +0.2 2,739,187 - +0.2 2,739,351 + SGL_RS14655 0.13 -1.0 2,739,351 + SGL_RS14655 0.13 -0.1 2,739,354 - SGL_RS14655 0.14 +0.0
Or see this region's nucleotide sequence