Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14400

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14390 and SGL_RS14395 are separated by 116 nucleotidesSGL_RS14395 and SGL_RS14400 are separated by 197 nucleotidesSGL_RS14400 and SGL_RS14405 are separated by 53 nucleotidesSGL_RS14405 and SGL_RS14415 are separated by 402 nucleotides SGL_RS14390: SGL_RS14390 - histidine phosphatase family protein, at 2,683,443 to 2,684,081 _RS14390 SGL_RS14395: SGL_RS14395 - hypothetical protein, at 2,684,198 to 2,684,824 _RS14395 SGL_RS14400: SGL_RS14400 - cation:proton antiporter, at 2,685,022 to 2,687,055 _RS14400 SGL_RS14405: SGL_RS14405 - DUF29 family protein, at 2,687,109 to 2,687,549 _RS14405 SGL_RS14415: SGL_RS14415 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 2,687,952 to 2,690,534 _RS14415 Position (kb) 2685 2686 2687 2688Strain fitness (log2 ratio) -1 0 1at 2684.171 kb on + strandat 2684.364 kb on - strand, within SGL_RS14395at 2684.457 kb on - strand, within SGL_RS14395at 2684.592 kb on - strand, within SGL_RS14395at 2684.592 kb on - strand, within SGL_RS14395at 2684.730 kb on + strand, within SGL_RS14395at 2684.754 kb on + strand, within SGL_RS14395at 2684.779 kb on - strandat 2684.783 kb on + strandat 2684.783 kb on + strandat 2684.791 kb on - strandat 2684.791 kb on - strandat 2684.791 kb on - strandat 2684.791 kb on - strandat 2684.796 kb on - strandat 2684.813 kb on - strandat 2684.835 kb on + strandat 2684.852 kb on + strandat 2685.026 kb on + strandat 2685.254 kb on - strand, within SGL_RS14400at 2685.268 kb on - strand, within SGL_RS14400at 2685.309 kb on - strand, within SGL_RS14400at 2685.341 kb on + strand, within SGL_RS14400at 2685.418 kb on - strand, within SGL_RS14400at 2685.437 kb on - strand, within SGL_RS14400at 2685.518 kb on - strand, within SGL_RS14400at 2685.665 kb on + strand, within SGL_RS14400at 2685.678 kb on - strand, within SGL_RS14400at 2685.895 kb on - strand, within SGL_RS14400at 2685.944 kb on + strand, within SGL_RS14400at 2685.944 kb on - strand, within SGL_RS14400at 2685.945 kb on - strand, within SGL_RS14400at 2685.956 kb on + strand, within SGL_RS14400at 2686.020 kb on + strand, within SGL_RS14400at 2686.042 kb on + strand, within SGL_RS14400at 2686.066 kb on + strand, within SGL_RS14400at 2686.066 kb on + strand, within SGL_RS14400at 2686.068 kb on + strand, within SGL_RS14400at 2686.082 kb on - strand, within SGL_RS14400at 2686.152 kb on + strand, within SGL_RS14400at 2686.160 kb on - strand, within SGL_RS14400at 2686.188 kb on - strand, within SGL_RS14400at 2686.213 kb on + strand, within SGL_RS14400at 2686.216 kb on - strand, within SGL_RS14400at 2686.221 kb on - strand, within SGL_RS14400at 2686.422 kb on + strand, within SGL_RS14400at 2686.460 kb on + strand, within SGL_RS14400at 2686.488 kb on + strand, within SGL_RS14400at 2686.605 kb on + strand, within SGL_RS14400at 2686.615 kb on + strand, within SGL_RS14400at 2686.617 kb on + strand, within SGL_RS14400at 2686.646 kb on + strand, within SGL_RS14400at 2686.707 kb on - strand, within SGL_RS14400at 2686.757 kb on + strand, within SGL_RS14400at 2686.757 kb on + strand, within SGL_RS14400at 2686.765 kb on - strand, within SGL_RS14400at 2686.925 kb on + strandat 2686.981 kb on - strandat 2686.986 kb on - strandat 2687.043 kb on + strandat 2687.389 kb on - strand, within SGL_RS14405at 2687.415 kb on + strand, within SGL_RS14405at 2687.694 kb on - strandat 2687.694 kb on - strandat 2687.768 kb on - strandat 2687.822 kb on + strandat 2687.841 kb on - strandat 2687.850 kb on + strandat 2687.850 kb on + strandat 2687.858 kb on + strandat 2687.864 kb on - strandat 2687.918 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,684,171 + +0.6
2,684,364 - SGL_RS14395 0.26 -0.2
2,684,457 - SGL_RS14395 0.41 +0.2
2,684,592 - SGL_RS14395 0.63 -0.2
2,684,592 - SGL_RS14395 0.63 +0.3
2,684,730 + SGL_RS14395 0.85 -0.2
2,684,754 + SGL_RS14395 0.89 +0.5
2,684,779 - +0.2
2,684,783 + -0.1
2,684,783 + +1.1
2,684,791 - -0.2
2,684,791 - -0.1
2,684,791 - +0.3
2,684,791 - +0.4
2,684,796 - +0.0
2,684,813 - +0.4
2,684,835 + -0.2
2,684,852 + -0.4
2,685,026 + -0.3
2,685,254 - SGL_RS14400 0.11 +0.3
2,685,268 - SGL_RS14400 0.12 +1.6
2,685,309 - SGL_RS14400 0.14 +0.6
2,685,341 + SGL_RS14400 0.16 +0.5
2,685,418 - SGL_RS14400 0.19 +0.2
2,685,437 - SGL_RS14400 0.20 +0.4
2,685,518 - SGL_RS14400 0.24 +0.1
2,685,665 + SGL_RS14400 0.32 +1.2
2,685,678 - SGL_RS14400 0.32 +0.7
2,685,895 - SGL_RS14400 0.43 +1.1
2,685,944 + SGL_RS14400 0.45 +0.6
2,685,944 - SGL_RS14400 0.45 +0.6
2,685,945 - SGL_RS14400 0.45 -0.2
2,685,956 + SGL_RS14400 0.46 +0.6
2,686,020 + SGL_RS14400 0.49 +0.2
2,686,042 + SGL_RS14400 0.50 -0.2
2,686,066 + SGL_RS14400 0.51 +0.8
2,686,066 + SGL_RS14400 0.51 +0.2
2,686,068 + SGL_RS14400 0.51 +0.5
2,686,082 - SGL_RS14400 0.52 +0.4
2,686,152 + SGL_RS14400 0.56 +0.7
2,686,160 - SGL_RS14400 0.56 -0.6
2,686,188 - SGL_RS14400 0.57 +0.4
2,686,213 + SGL_RS14400 0.59 +0.5
2,686,216 - SGL_RS14400 0.59 +0.1
2,686,221 - SGL_RS14400 0.59 -0.0
2,686,422 + SGL_RS14400 0.69 +0.1
2,686,460 + SGL_RS14400 0.71 +0.1
2,686,488 + SGL_RS14400 0.72 +0.7
2,686,605 + SGL_RS14400 0.78 +0.4
2,686,615 + SGL_RS14400 0.78 +0.2
2,686,617 + SGL_RS14400 0.78 +0.3
2,686,646 + SGL_RS14400 0.80 +0.3
2,686,707 - SGL_RS14400 0.83 +0.6
2,686,757 + SGL_RS14400 0.85 +0.5
2,686,757 + SGL_RS14400 0.85 +0.5
2,686,765 - SGL_RS14400 0.86 -0.1
2,686,925 + +0.1
2,686,981 - -0.1
2,686,986 - -0.2
2,687,043 + +0.5
2,687,389 - SGL_RS14405 0.63 -0.1
2,687,415 + SGL_RS14405 0.69 -0.1
2,687,694 - +0.3
2,687,694 - +0.1
2,687,768 - +0.1
2,687,822 + -0.5
2,687,841 - +0.3
2,687,850 + +0.2
2,687,850 + -0.2
2,687,858 + -0.3
2,687,864 - +0.1
2,687,918 + -0.9

Or see this region's nucleotide sequence