Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14085

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS14080 and SGL_RS14085 are separated by 76 nucleotidesSGL_RS14085 and SGL_RS14090 are separated by 135 nucleotides SGL_RS14080: SGL_RS14080 - DICT sensory domain-containing protein, at 2,618,067 to 2,620,094 _RS14080 SGL_RS14085: SGL_RS14085 - PAS domain-containing protein, at 2,620,171 to 2,620,662 _RS14085 SGL_RS14090: SGL_RS14090 - murein biosynthesis integral membrane protein MurJ, at 2,620,798 to 2,622,399 _RS14090 Position (kb) 2620 2621Strain fitness (log2 ratio) -1 0 1at 2619.177 kb on + strand, within SGL_RS14080at 2619.211 kb on - strand, within SGL_RS14080at 2619.246 kb on + strand, within SGL_RS14080at 2619.247 kb on - strand, within SGL_RS14080at 2619.299 kb on - strand, within SGL_RS14080at 2619.299 kb on - strand, within SGL_RS14080at 2619.316 kb on - strand, within SGL_RS14080at 2619.316 kb on - strand, within SGL_RS14080at 2619.368 kb on - strand, within SGL_RS14080at 2619.395 kb on + strand, within SGL_RS14080at 2619.409 kb on + strand, within SGL_RS14080at 2619.443 kb on - strand, within SGL_RS14080at 2619.552 kb on - strand, within SGL_RS14080at 2619.605 kb on - strand, within SGL_RS14080at 2619.773 kb on + strand, within SGL_RS14080at 2619.781 kb on - strand, within SGL_RS14080at 2619.791 kb on - strand, within SGL_RS14080at 2619.805 kb on - strand, within SGL_RS14080at 2619.874 kb on + strand, within SGL_RS14080at 2620.166 kb on + strandat 2620.240 kb on + strand, within SGL_RS14085at 2620.385 kb on - strand, within SGL_RS14085at 2620.387 kb on + strand, within SGL_RS14085at 2620.494 kb on - strand, within SGL_RS14085at 2620.509 kb on + strand, within SGL_RS14085at 2620.522 kb on - strand, within SGL_RS14085at 2620.580 kb on + strand, within SGL_RS14085at 2620.612 kb on + strand, within SGL_RS14085at 2620.658 kb on + strandat 2620.689 kb on - strandat 2620.736 kb on + strandat 2620.744 kb on - strandat 2620.744 kb on - strandat 2620.744 kb on - strandat 2620.744 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
remove
2,619,177 + SGL_RS14080 0.55 -0.7
2,619,211 - SGL_RS14080 0.56 -0.3
2,619,246 + SGL_RS14080 0.58 -0.2
2,619,247 - SGL_RS14080 0.58 +0.1
2,619,299 - SGL_RS14080 0.61 +0.9
2,619,299 - SGL_RS14080 0.61 -0.2
2,619,316 - SGL_RS14080 0.62 -0.4
2,619,316 - SGL_RS14080 0.62 +0.2
2,619,368 - SGL_RS14080 0.64 +1.0
2,619,395 + SGL_RS14080 0.65 +0.1
2,619,409 + SGL_RS14080 0.66 -0.5
2,619,443 - SGL_RS14080 0.68 +0.3
2,619,552 - SGL_RS14080 0.73 +0.4
2,619,605 - SGL_RS14080 0.76 +0.1
2,619,773 + SGL_RS14080 0.84 -0.2
2,619,781 - SGL_RS14080 0.85 -0.2
2,619,791 - SGL_RS14080 0.85 +0.1
2,619,805 - SGL_RS14080 0.86 -0.1
2,619,874 + SGL_RS14080 0.89 -0.1
2,620,166 + -0.2
2,620,240 + SGL_RS14085 0.14 +0.5
2,620,385 - SGL_RS14085 0.43 +0.2
2,620,387 + SGL_RS14085 0.44 +0.2
2,620,494 - SGL_RS14085 0.66 +0.1
2,620,509 + SGL_RS14085 0.69 +1.5
2,620,522 - SGL_RS14085 0.71 -1.5
2,620,580 + SGL_RS14085 0.83 +1.0
2,620,612 + SGL_RS14085 0.90 +0.0
2,620,658 + +0.0
2,620,689 - +0.3
2,620,736 + -0.0
2,620,744 - -0.2
2,620,744 - -0.2
2,620,744 - +0.8
2,620,744 - -0.1

Or see this region's nucleotide sequence