Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14005

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13995 and SGL_RS14000 are separated by 35 nucleotidesSGL_RS14000 and SGL_RS14005 are separated by 121 nucleotidesSGL_RS14005 and SGL_RS14010 are separated by 164 nucleotides SGL_RS13995: SGL_RS13995 - methionyl-tRNA formyltransferase, at 2,600,705 to 2,601,697 _RS13995 SGL_RS14000: SGL_RS14000 - ABC transporter ATP-binding protein, at 2,601,733 to 2,602,536 _RS14000 SGL_RS14005: SGL_RS14005 - abortive infection system antitoxin AbiGi family protein, at 2,602,658 to 2,603,782 _RS14005 SGL_RS14010: SGL_RS14010 - 30S ribosomal protein S4, at 2,603,947 to 2,604,555 _RS14010 Position (kb) 2602 2603 2604Strain fitness (log2 ratio) -1 0 1at 2601.702 kb on + strandat 2601.794 kb on + strandat 2601.802 kb on - strandat 2601.883 kb on + strand, within SGL_RS14000at 2601.924 kb on + strand, within SGL_RS14000at 2601.951 kb on - strand, within SGL_RS14000at 2601.968 kb on - strand, within SGL_RS14000at 2602.043 kb on - strand, within SGL_RS14000at 2602.052 kb on + strand, within SGL_RS14000at 2602.097 kb on - strand, within SGL_RS14000at 2602.196 kb on + strand, within SGL_RS14000at 2602.204 kb on - strand, within SGL_RS14000at 2602.215 kb on + strand, within SGL_RS14000at 2602.218 kb on - strand, within SGL_RS14000at 2602.218 kb on - strand, within SGL_RS14000at 2602.264 kb on + strand, within SGL_RS14000at 2602.325 kb on + strand, within SGL_RS14000at 2602.438 kb on - strand, within SGL_RS14000at 2602.464 kb on - strandat 2602.582 kb on + strandat 2602.756 kb on + strandat 2603.197 kb on + strand, within SGL_RS14005at 2603.210 kb on - strand, within SGL_RS14005at 2603.515 kb on - strand, within SGL_RS14005at 2603.733 kb on - strandat 2603.847 kb on + strandat 2603.851 kb on - strandat 2604.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,601,702 + -0.2
2,601,794 + +0.1
2,601,802 - -0.1
2,601,883 + SGL_RS14000 0.19 +0.1
2,601,924 + SGL_RS14000 0.24 +0.2
2,601,951 - SGL_RS14000 0.27 +0.5
2,601,968 - SGL_RS14000 0.29 -0.1
2,602,043 - SGL_RS14000 0.39 +0.1
2,602,052 + SGL_RS14000 0.40 -1.0
2,602,097 - SGL_RS14000 0.45 -0.5
2,602,196 + SGL_RS14000 0.58 -0.4
2,602,204 - SGL_RS14000 0.59 +0.2
2,602,215 + SGL_RS14000 0.60 +0.1
2,602,218 - SGL_RS14000 0.60 +0.1
2,602,218 - SGL_RS14000 0.60 +0.3
2,602,264 + SGL_RS14000 0.66 +0.1
2,602,325 + SGL_RS14000 0.74 +1.0
2,602,438 - SGL_RS14000 0.88 +0.3
2,602,464 - +0.6
2,602,582 + -0.4
2,602,756 + -0.5
2,603,197 + SGL_RS14005 0.48 +0.9
2,603,210 - SGL_RS14005 0.49 +0.4
2,603,515 - SGL_RS14005 0.76 -0.1
2,603,733 - -0.0
2,603,847 + -0.1
2,603,851 - +0.5
2,604,636 - -0.3

Or see this region's nucleotide sequence