Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13990

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13980 and SGL_RS13985 are separated by 117 nucleotidesSGL_RS13985 and SGL_RS13990 are separated by 37 nucleotidesSGL_RS13990 and SGL_RS13995 are separated by 213 nucleotides SGL_RS13980: SGL_RS13980 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,597,851 to 2,599,197 _RS13980 SGL_RS13985: SGL_RS13985 - hypothetical protein, at 2,599,315 to 2,599,974 _RS13985 SGL_RS13990: SGL_RS13990 - nucleoside deaminase, at 2,600,012 to 2,600,491 _RS13990 SGL_RS13995: SGL_RS13995 - methionyl-tRNA formyltransferase, at 2,600,705 to 2,601,697 _RS13995 Position (kb) 2600 2601Strain fitness (log2 ratio) -1 0 1at 2599.311 kb on + strandat 2599.331 kb on + strandat 2599.331 kb on + strandat 2599.338 kb on - strandat 2599.646 kb on - strand, within SGL_RS13985at 2599.749 kb on - strand, within SGL_RS13985at 2599.834 kb on + strand, within SGL_RS13985at 2599.834 kb on + strand, within SGL_RS13985at 2599.870 kb on - strand, within SGL_RS13985at 2600.163 kb on - strand, within SGL_RS13990at 2600.196 kb on + strand, within SGL_RS13990at 2600.247 kb on + strand, within SGL_RS13990at 2600.257 kb on - strand, within SGL_RS13990at 2600.307 kb on + strand, within SGL_RS13990at 2600.307 kb on + strand, within SGL_RS13990at 2600.315 kb on - strand, within SGL_RS13990at 2600.354 kb on + strand, within SGL_RS13990at 2600.362 kb on - strand, within SGL_RS13990at 2600.362 kb on - strand, within SGL_RS13990at 2600.362 kb on - strand, within SGL_RS13990at 2600.415 kb on + strand, within SGL_RS13990at 2600.482 kb on - strandat 2600.496 kb on - strandat 2600.691 kb on - strandat 2600.828 kb on - strand, within SGL_RS13995at 2601.114 kb on + strand, within SGL_RS13995at 2601.134 kb on + strand, within SGL_RS13995at 2601.275 kb on + strand, within SGL_RS13995at 2601.383 kb on + strand, within SGL_RS13995at 2601.412 kb on + strand, within SGL_RS13995

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,599,311 + +0.4
2,599,331 + +0.2
2,599,331 + +0.6
2,599,338 - +0.0
2,599,646 - SGL_RS13985 0.50 -0.3
2,599,749 - SGL_RS13985 0.66 -0.1
2,599,834 + SGL_RS13985 0.79 +0.5
2,599,834 + SGL_RS13985 0.79 +0.2
2,599,870 - SGL_RS13985 0.84 -0.5
2,600,163 - SGL_RS13990 0.31 +0.5
2,600,196 + SGL_RS13990 0.38 -0.2
2,600,247 + SGL_RS13990 0.49 +0.3
2,600,257 - SGL_RS13990 0.51 +0.5
2,600,307 + SGL_RS13990 0.61 +0.6
2,600,307 + SGL_RS13990 0.61 +1.3
2,600,315 - SGL_RS13990 0.63 -0.0
2,600,354 + SGL_RS13990 0.71 -0.2
2,600,362 - SGL_RS13990 0.73 +0.5
2,600,362 - SGL_RS13990 0.73 -0.2
2,600,362 - SGL_RS13990 0.73 +0.5
2,600,415 + SGL_RS13990 0.84 +0.2
2,600,482 - +0.2
2,600,496 - +0.0
2,600,691 - +0.6
2,600,828 - SGL_RS13995 0.12 -1.4
2,601,114 + SGL_RS13995 0.41 -1.0
2,601,134 + SGL_RS13995 0.43 +0.0
2,601,275 + SGL_RS13995 0.57 +0.0
2,601,383 + SGL_RS13995 0.68 +0.6
2,601,412 + SGL_RS13995 0.71 -1.7

Or see this region's nucleotide sequence