Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13930

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13925 and SGL_RS13930 are separated by 273 nucleotidesSGL_RS13930 and SGL_RS13935 are separated by 30 nucleotides SGL_RS13925: SGL_RS13925 - patatin-like phospholipase family protein, at 2,583,410 to 2,584,519 _RS13925 SGL_RS13930: SGL_RS13930 - hypothetical protein, at 2,584,793 to 2,585,458 _RS13930 SGL_RS13935: SGL_RS13935 - AI-2E family transporter, at 2,585,489 to 2,586,523 _RS13935 Position (kb) 2584 2585 2586Strain fitness (log2 ratio) -1 0 1 2at 2584.844 kb on + strandat 2584.913 kb on - strand, within SGL_RS13930at 2585.124 kb on + strand, within SGL_RS13930at 2585.154 kb on + strand, within SGL_RS13930at 2585.350 kb on - strand, within SGL_RS13930at 2585.505 kb on + strandat 2585.566 kb on + strandat 2585.663 kb on + strand, within SGL_RS13935at 2585.695 kb on - strand, within SGL_RS13935at 2585.804 kb on + strand, within SGL_RS13935at 2586.030 kb on - strand, within SGL_RS13935at 2586.168 kb on + strand, within SGL_RS13935at 2586.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,584,844 + -0.1
2,584,913 - SGL_RS13930 0.18 +0.3
2,585,124 + SGL_RS13930 0.50 -0.0
2,585,154 + SGL_RS13930 0.54 +0.5
2,585,350 - SGL_RS13930 0.84 +2.2
2,585,505 + -0.1
2,585,566 + +0.2
2,585,663 + SGL_RS13935 0.17 +0.9
2,585,695 - SGL_RS13935 0.20 -0.1
2,585,804 + SGL_RS13935 0.30 -0.3
2,586,030 - SGL_RS13935 0.52 +0.0
2,586,168 + SGL_RS13935 0.66 -0.1
2,586,450 + -0.2

Or see this region's nucleotide sequence