Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13230

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13225 and SGL_RS13230 are separated by 45 nucleotidesSGL_RS13230 and SGL_RS13235 are separated by 138 nucleotidesSGL_RS13235 and SGL_RS13240 are separated by 6 nucleotides SGL_RS13225: SGL_RS13225 - carbamoyltransferase HypF, at 2,432,459 to 2,434,762 _RS13225 SGL_RS13230: SGL_RS13230 - FAD-dependent oxidoreductase, at 2,434,808 to 2,436,304 _RS13230 SGL_RS13235: SGL_RS13235 - ABC transporter permease, at 2,436,443 to 2,437,228 _RS13235 SGL_RS13240: SGL_RS13240 - ribonuclease D, at 2,437,235 to 2,437,888 _RS13240 Position (kb) 2434 2435 2436 2437Strain fitness (log2 ratio) -1 0 1at 2433.847 kb on - strand, within SGL_RS13225at 2434.178 kb on + strand, within SGL_RS13225at 2434.230 kb on + strand, within SGL_RS13225at 2434.361 kb on - strand, within SGL_RS13225at 2434.491 kb on - strand, within SGL_RS13225at 2435.147 kb on - strand, within SGL_RS13230at 2435.395 kb on + strand, within SGL_RS13230at 2435.401 kb on - strand, within SGL_RS13230at 2435.401 kb on - strand, within SGL_RS13230at 2435.401 kb on - strand, within SGL_RS13230at 2435.655 kb on - strand, within SGL_RS13230at 2435.688 kb on - strand, within SGL_RS13230at 2435.688 kb on - strand, within SGL_RS13230at 2435.720 kb on + strand, within SGL_RS13230at 2435.770 kb on - strand, within SGL_RS13230at 2435.898 kb on - strand, within SGL_RS13230at 2435.923 kb on + strand, within SGL_RS13230at 2435.966 kb on + strand, within SGL_RS13230at 2436.331 kb on + strandat 2436.737 kb on - strand, within SGL_RS13235at 2436.798 kb on - strand, within SGL_RS13235at 2436.894 kb on + strand, within SGL_RS13235at 2436.902 kb on - strand, within SGL_RS13235at 2437.005 kb on - strand, within SGL_RS13235at 2437.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,433,847 - SGL_RS13225 0.60 +0.2
2,434,178 + SGL_RS13225 0.75 +0.2
2,434,230 + SGL_RS13225 0.77 +0.2
2,434,361 - SGL_RS13225 0.83 -0.1
2,434,491 - SGL_RS13225 0.88 -0.3
2,435,147 - SGL_RS13230 0.23 +0.3
2,435,395 + SGL_RS13230 0.39 +0.4
2,435,401 - SGL_RS13230 0.40 +0.3
2,435,401 - SGL_RS13230 0.40 -0.2
2,435,401 - SGL_RS13230 0.40 +0.2
2,435,655 - SGL_RS13230 0.57 +0.4
2,435,688 - SGL_RS13230 0.59 +0.1
2,435,688 - SGL_RS13230 0.59 -0.0
2,435,720 + SGL_RS13230 0.61 +1.1
2,435,770 - SGL_RS13230 0.64 +0.7
2,435,898 - SGL_RS13230 0.73 +0.1
2,435,923 + SGL_RS13230 0.74 +0.2
2,435,966 + SGL_RS13230 0.77 +0.2
2,436,331 + +0.4
2,436,737 - SGL_RS13235 0.37 +0.2
2,436,798 - SGL_RS13235 0.45 +0.3
2,436,894 + SGL_RS13235 0.57 +0.0
2,436,902 - SGL_RS13235 0.58 +0.4
2,437,005 - SGL_RS13235 0.72 -0.7
2,437,184 - -0.3

Or see this region's nucleotide sequence