Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12640

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12630 and SGL_RS12635 are separated by 64 nucleotidesSGL_RS12635 and SGL_RS12640 are separated by 283 nucleotidesSGL_RS12640 and SGL_RS12645 are separated by 131 nucleotides SGL_RS12630: SGL_RS12630 - SH3 domain-containing protein, at 2,289,704 to 2,290,024 _RS12630 SGL_RS12635: SGL_RS12635 - hypothetical protein, at 2,290,089 to 2,290,421 _RS12635 SGL_RS12640: SGL_RS12640 - hypothetical protein, at 2,290,705 to 2,290,959 _RS12640 SGL_RS12645: SGL_RS12645 - hypothetical protein, at 2,291,091 to 2,291,879 _RS12645 Position (kb) 2290 2291Strain fitness (log2 ratio) -1 0 1at 2289.873 kb on - strand, within SGL_RS12630at 2289.901 kb on - strand, within SGL_RS12630at 2289.964 kb on + strand, within SGL_RS12630at 2290.121 kb on + strandat 2290.854 kb on - strand, within SGL_RS12640at 2291.413 kb on - strand, within SGL_RS12645at 2291.426 kb on - strand, within SGL_RS12645at 2291.526 kb on + strand, within SGL_RS12645at 2291.592 kb on + strand, within SGL_RS12645at 2291.626 kb on - strand, within SGL_RS12645

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,289,873 - SGL_RS12630 0.53 -0.2
2,289,901 - SGL_RS12630 0.61 +0.0
2,289,964 + SGL_RS12630 0.81 -0.4
2,290,121 + +0.3
2,290,854 - SGL_RS12640 0.58 +0.5
2,291,413 - SGL_RS12645 0.41 -0.1
2,291,426 - SGL_RS12645 0.42 -0.2
2,291,526 + SGL_RS12645 0.55 -0.4
2,291,592 + SGL_RS12645 0.63 +0.0
2,291,626 - SGL_RS12645 0.68 -0.2

Or see this region's nucleotide sequence