Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12375

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12360 and SGL_RS12365 are separated by 30 nucleotidesSGL_RS12365 and SGL_RS12370 are separated by 224 nucleotidesSGL_RS12370 and SGL_RS12375 are separated by 21 nucleotidesSGL_RS12375 and SGL_RS19925 are separated by 78 nucleotidesSGL_RS19925 and SGL_RS18970 overlap by 91 nucleotidesSGL_RS18970 and SGL_RS12390 are separated by 10 nucleotides SGL_RS12360: SGL_RS12360 - DUF3750 domain-containing protein, at 2,233,809 to 2,234,273 _RS12360 SGL_RS12365: SGL_RS12365 - nucleoside-diphosphate kinase, at 2,234,304 to 2,234,753 _RS12365 SGL_RS12370: SGL_RS12370 - tRNA-Ala, at 2,234,978 to 2,235,050 _RS12370 SGL_RS12375: SGL_RS12375 - hypothetical protein, at 2,235,072 to 2,235,482 _RS12375 SGL_RS19925: SGL_RS19925 - IS630 transposase-related protein, at 2,235,561 to 2,235,920 _RS19925 SGL_RS18970: SGL_RS18970 - IS630 family transposase, at 2,235,830 to 2,236,408 _RS18970 SGL_RS12390: SGL_RS12390 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,236,419 to 2,237,054 _RS12390 Position (kb) 2235 2236Strain fitness (log2 ratio) -2 -1 0 1at 2234.116 kb on + strand, within SGL_RS12360at 2234.158 kb on - strand, within SGL_RS12360at 2234.328 kb on - strandat 2234.365 kb on - strand, within SGL_RS12365at 2234.411 kb on + strand, within SGL_RS12365at 2234.540 kb on - strand, within SGL_RS12365at 2234.867 kb on - strandat 2234.959 kb on + strandat 2235.159 kb on + strand, within SGL_RS12375at 2236.447 kb on - strandat 2236.462 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,234,116 + SGL_RS12360 0.66 +0.2
2,234,158 - SGL_RS12360 0.75 +0.2
2,234,328 - +0.2
2,234,365 - SGL_RS12365 0.14 -1.7
2,234,411 + SGL_RS12365 0.24 -1.7
2,234,540 - SGL_RS12365 0.52 -2.7
2,234,867 - +0.1
2,234,959 + +0.6
2,235,159 + SGL_RS12375 0.21 +0.5
2,236,447 - +0.3
2,236,462 + -0.2

Or see this region's nucleotide sequence