Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12315

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18965 and SGL_RS12310 are separated by 57 nucleotidesSGL_RS12310 and SGL_RS12315 are separated by 220 nucleotidesSGL_RS12315 and SGL_RS12320 are separated by 198 nucleotidesSGL_RS12320 and SGL_RS12325 are separated by 56 nucleotides SGL_RS18965: SGL_RS18965 - hypothetical protein, at 2,222,898 to 2,223,815 _RS18965 SGL_RS12310: SGL_RS12310 - alpha/beta hydrolase, at 2,223,873 to 2,224,568 _RS12310 SGL_RS12315: SGL_RS12315 - hypothetical protein, at 2,224,789 to 2,225,079 _RS12315 SGL_RS12320: SGL_RS12320 - hypothetical protein, at 2,225,278 to 2,225,709 _RS12320 SGL_RS12325: SGL_RS12325 - IS5 family transposase, at 2,225,766 to 2,226,530 _RS12325 Position (kb) 2224 2225 2226Strain fitness (log2 ratio) -1 0 1at 2223.925 kb on - strandat 2223.930 kb on - strandat 2224.095 kb on + strand, within SGL_RS12310at 2224.148 kb on + strand, within SGL_RS12310at 2224.211 kb on - strand, within SGL_RS12310at 2224.324 kb on - strand, within SGL_RS12310at 2224.334 kb on + strand, within SGL_RS12310at 2224.337 kb on - strand, within SGL_RS12310at 2224.354 kb on - strand, within SGL_RS12310at 2224.355 kb on - strand, within SGL_RS12310at 2224.476 kb on + strand, within SGL_RS12310at 2224.677 kb on - strandat 2224.785 kb on - strandat 2224.883 kb on - strand, within SGL_RS12315at 2224.895 kb on - strand, within SGL_RS12315at 2224.895 kb on - strand, within SGL_RS12315at 2225.164 kb on - strandat 2225.186 kb on + strandat 2225.349 kb on - strand, within SGL_RS12320at 2225.420 kb on + strand, within SGL_RS12320at 2225.428 kb on - strand, within SGL_RS12320at 2225.514 kb on + strand, within SGL_RS12320at 2225.570 kb on - strand, within SGL_RS12320at 2225.571 kb on + strand, within SGL_RS12320at 2225.571 kb on + strand, within SGL_RS12320at 2225.579 kb on - strand, within SGL_RS12320

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,223,925 - +1.0
2,223,930 - +0.0
2,224,095 + SGL_RS12310 0.32 -0.2
2,224,148 + SGL_RS12310 0.40 -0.3
2,224,211 - SGL_RS12310 0.49 +1.5
2,224,324 - SGL_RS12310 0.65 +0.0
2,224,334 + SGL_RS12310 0.66 +0.5
2,224,337 - SGL_RS12310 0.67 -0.6
2,224,354 - SGL_RS12310 0.69 -0.1
2,224,355 - SGL_RS12310 0.69 -0.0
2,224,476 + SGL_RS12310 0.87 +0.4
2,224,677 - +0.4
2,224,785 - +0.1
2,224,883 - SGL_RS12315 0.32 +0.6
2,224,895 - SGL_RS12315 0.36 -0.2
2,224,895 - SGL_RS12315 0.36 +0.6
2,225,164 - -0.3
2,225,186 + +0.6
2,225,349 - SGL_RS12320 0.16 +1.0
2,225,420 + SGL_RS12320 0.33 +0.1
2,225,428 - SGL_RS12320 0.35 +0.5
2,225,514 + SGL_RS12320 0.55 -0.2
2,225,570 - SGL_RS12320 0.68 +0.0
2,225,571 + SGL_RS12320 0.68 -0.3
2,225,571 + SGL_RS12320 0.68 +0.1
2,225,579 - SGL_RS12320 0.70 +0.1

Or see this region's nucleotide sequence