Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11930

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11925 and SGL_RS11930 are separated by 163 nucleotidesSGL_RS11930 and SGL_RS11935 are separated by 76 nucleotidesSGL_RS11935 and SGL_RS11940 are separated by 158 nucleotides SGL_RS11925: SGL_RS11925 - glutamine synthetase III, at 2,128,767 to 2,130,941 _RS11925 SGL_RS11930: SGL_RS11930 - DUF29 domain-containing protein, at 2,131,105 to 2,131,539 _RS11930 SGL_RS11935: SGL_RS11935 - photosystem II cytochrome c-550, at 2,131,616 to 2,132,098 _RS11935 SGL_RS11940: SGL_RS11940 - hypothetical protein, at 2,132,257 to 2,132,457 _RS11940 Position (kb) 2131 2132Strain fitness (log2 ratio) -1 0 1at 2130.130 kb on + strand, within SGL_RS11925at 2130.205 kb on + strand, within SGL_RS11925at 2130.239 kb on + strand, within SGL_RS11925at 2130.262 kb on + strand, within SGL_RS11925at 2130.389 kb on - strand, within SGL_RS11925at 2130.799 kb on - strandat 2130.896 kb on + strandat 2131.150 kb on - strand, within SGL_RS11930at 2132.377 kb on + strand, within SGL_RS11940

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,130,130 + SGL_RS11925 0.63 +0.4
2,130,205 + SGL_RS11925 0.66 -1.0
2,130,239 + SGL_RS11925 0.68 +0.2
2,130,262 + SGL_RS11925 0.69 +0.4
2,130,389 - SGL_RS11925 0.75 +0.4
2,130,799 - +0.0
2,130,896 + -0.3
2,131,150 - SGL_RS11930 0.10 +0.3
2,132,377 + SGL_RS11940 0.60 -0.4

Or see this region's nucleotide sequence