Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11750

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11740 and SGL_RS11745 are separated by 70 nucleotidesSGL_RS11745 and SGL_RS11750 are separated by 254 nucleotidesSGL_RS11750 and SGL_RS11755 are separated by 43 nucleotides SGL_RS11740: SGL_RS11740 - hypothetical protein, at 2,087,407 to 2,087,733 _RS11740 SGL_RS11745: SGL_RS11745 - tRNA-Gln, at 2,087,804 to 2,087,875 _RS11745 SGL_RS11750: SGL_RS11750 - hypothetical protein, at 2,088,130 to 2,088,636 _RS11750 SGL_RS11755: SGL_RS11755 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,088,680 to 2,090,023 _RS11755 Position (kb) 2088 2089Strain fitness (log2 ratio) -1 0 1at 2087.339 kb on - strandat 2087.518 kb on + strand, within SGL_RS11740at 2087.535 kb on - strand, within SGL_RS11740at 2087.537 kb on - strand, within SGL_RS11740at 2087.596 kb on + strand, within SGL_RS11740at 2087.648 kb on - strand, within SGL_RS11740at 2087.980 kb on + strandat 2087.982 kb on + strandat 2087.987 kb on + strandat 2088.395 kb on + strand, within SGL_RS11750at 2088.557 kb on + strand, within SGL_RS11750

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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2,087,339 - -0.2
2,087,518 + SGL_RS11740 0.34 +0.0
2,087,535 - SGL_RS11740 0.39 +0.0
2,087,537 - SGL_RS11740 0.40 -0.3
2,087,596 + SGL_RS11740 0.58 +0.5
2,087,648 - SGL_RS11740 0.74 +1.6
2,087,980 + -0.3
2,087,982 + -0.1
2,087,987 + +0.0
2,088,395 + SGL_RS11750 0.52 +0.9
2,088,557 + SGL_RS11750 0.84 -0.3

Or see this region's nucleotide sequence