Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11590

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11580 and SGL_RS11585 are separated by 128 nucleotidesSGL_RS11585 and SGL_RS11590 are separated by 66 nucleotidesSGL_RS11590 and SGL_RS11595 are separated by 13 nucleotides SGL_RS11580: SGL_RS11580 - DUF760 domain-containing protein, at 2,050,496 to 2,050,819 _RS11580 SGL_RS11585: SGL_RS11585 - SsrA-binding protein SmpB, at 2,050,948 to 2,051,412 _RS11585 SGL_RS11590: SGL_RS11590 - hypothetical protein, at 2,051,479 to 2,053,305 _RS11590 SGL_RS11595: SGL_RS11595 - FkbM family methyltransferase, at 2,053,319 to 2,054,479 _RS11595 Position (kb) 2051 2052 2053 2054Strain fitness (log2 ratio) -1 0 1at 2050.543 kb on - strand, within SGL_RS11580at 2050.555 kb on + strand, within SGL_RS11580at 2050.756 kb on - strand, within SGL_RS11580at 2050.837 kb on - strandat 2050.837 kb on - strandat 2051.059 kb on - strand, within SGL_RS11585at 2051.452 kb on - strandat 2051.670 kb on + strand, within SGL_RS11590at 2051.810 kb on + strand, within SGL_RS11590at 2052.034 kb on - strand, within SGL_RS11590at 2052.091 kb on - strand, within SGL_RS11590at 2053.641 kb on + strand, within SGL_RS11595at 2053.641 kb on + strand, within SGL_RS11595at 2053.649 kb on - strand, within SGL_RS11595at 2053.649 kb on - strand, within SGL_RS11595at 2053.723 kb on + strand, within SGL_RS11595at 2053.811 kb on - strand, within SGL_RS11595at 2053.851 kb on + strand, within SGL_RS11595at 2054.257 kb on - strand, within SGL_RS11595at 2054.291 kb on - strand, within SGL_RS11595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
remove
2,050,543 - SGL_RS11580 0.15 -1.5
2,050,555 + SGL_RS11580 0.18 -0.3
2,050,756 - SGL_RS11580 0.80 -1.1
2,050,837 - -0.6
2,050,837 - -0.4
2,051,059 - SGL_RS11585 0.24 -1.5
2,051,452 - -0.0
2,051,670 + SGL_RS11590 0.10 +0.5
2,051,810 + SGL_RS11590 0.18 +0.1
2,052,034 - SGL_RS11590 0.30 +1.2
2,052,091 - SGL_RS11590 0.33 +0.1
2,053,641 + SGL_RS11595 0.28 -0.7
2,053,641 + SGL_RS11595 0.28 -0.1
2,053,649 - SGL_RS11595 0.28 +0.7
2,053,649 - SGL_RS11595 0.28 -0.0
2,053,723 + SGL_RS11595 0.35 -0.2
2,053,811 - SGL_RS11595 0.42 -0.5
2,053,851 + SGL_RS11595 0.46 +0.8
2,054,257 - SGL_RS11595 0.81 +0.4
2,054,291 - SGL_RS11595 0.84 +0.6

Or see this region's nucleotide sequence