Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10990

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10985 and SGL_RS10990 are separated by 24 nucleotidesSGL_RS10990 and SGL_RS10995 are separated by 301 nucleotides SGL_RS10985: SGL_RS10985 - carbohydrate porin, at 1,926,030 to 1,927,700 _RS10985 SGL_RS10990: SGL_RS10990 - hypothetical protein, at 1,927,725 to 1,928,021 _RS10990 SGL_RS10995: SGL_RS10995 - ribonucleoside-diphosphate reductase subunit alpha, at 1,928,323 to 1,930,626 _RS10995 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -1 0 1at 1926.844 kb on + strand, within SGL_RS10985at 1926.867 kb on - strand, within SGL_RS10985at 1927.169 kb on - strand, within SGL_RS10985at 1927.176 kb on + strand, within SGL_RS10985at 1927.392 kb on + strand, within SGL_RS10985at 1927.402 kb on + strand, within SGL_RS10985at 1927.491 kb on - strand, within SGL_RS10985at 1927.580 kb on + strandat 1927.671 kb on - strandat 1927.677 kb on + strandat 1927.683 kb on - strandat 1927.685 kb on - strandat 1927.935 kb on - strand, within SGL_RS10990at 1927.977 kb on - strand, within SGL_RS10990at 1928.115 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,926,844 + SGL_RS10985 0.49 +0.1
1,926,867 - SGL_RS10985 0.50 +0.0
1,927,169 - SGL_RS10985 0.68 -0.1
1,927,176 + SGL_RS10985 0.69 +0.0
1,927,392 + SGL_RS10985 0.82 -0.4
1,927,402 + SGL_RS10985 0.82 -0.1
1,927,491 - SGL_RS10985 0.87 +0.4
1,927,580 + -0.0
1,927,671 - +0.0
1,927,677 + +0.2
1,927,683 - +0.3
1,927,685 - -0.1
1,927,935 - SGL_RS10990 0.71 -0.0
1,927,977 - SGL_RS10990 0.85 +0.8
1,928,115 + +0.8

Or see this region's nucleotide sequence