Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10955

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10950 and SGL_RS10955 are separated by 204 nucleotidesSGL_RS10955 and SGL_RS10960 are separated by 52 nucleotidesSGL_RS10960 and SGL_RS19900 are separated by 55 nucleotidesSGL_RS19900 and SGL_RS19905 are separated by 152 nucleotides SGL_RS10950: SGL_RS10950 - phosphoribosylamine--glycine ligase, at 1,920,660 to 1,921,919 _RS10950 SGL_RS10955: SGL_RS10955 - hypothetical protein, at 1,922,124 to 1,922,738 _RS10955 SGL_RS10960: SGL_RS10960 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 1,922,791 to 1,923,114 _RS10960 SGL_RS19900: SGL_RS19900 - transposase, at 1,923,170 to 1,923,472 _RS19900 SGL_RS19905: SGL_RS19905 - hypothetical protein, at 1,923,625 to 1,923,897 _RS19905 Position (kb) 1922 1923Strain fitness (log2 ratio) -2 -1 0 1at 1921.416 kb on - strand, within SGL_RS10950at 1922.086 kb on + strandat 1922.152 kb on + strandat 1922.167 kb on + strandat 1922.592 kb on + strand, within SGL_RS10955at 1922.700 kb on - strandat 1922.876 kb on - strand, within SGL_RS10960at 1922.981 kb on + strand, within SGL_RS10960at 1923.189 kb on + strandat 1923.434 kb on + strand, within SGL_RS19900at 1923.577 kb on + strandat 1923.594 kb on - strandat 1923.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,921,416 - SGL_RS10950 0.60 -1.0
1,922,086 + -1.9
1,922,152 + +0.3
1,922,167 + +0.6
1,922,592 + SGL_RS10955 0.76 +0.6
1,922,700 - +1.0
1,922,876 - SGL_RS10960 0.26 -0.0
1,922,981 + SGL_RS10960 0.59 +0.5
1,923,189 + -0.0
1,923,434 + SGL_RS19900 0.87 -0.8
1,923,577 + +0.0
1,923,594 - -0.7
1,923,595 - +0.1

Or see this region's nucleotide sequence