Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10645

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10640 and SGL_RS10645 are separated by 87 nucleotidesSGL_RS10645 and SGL_RS10650 are separated by 129 nucleotidesSGL_RS10650 and SGL_RS10655 are separated by 4 nucleotides SGL_RS10640: SGL_RS10640 - DNA-directed RNA polymerase subunit gamma, at 1,854,102 to 1,855,982 _RS10640 SGL_RS10645: SGL_RS10645 - carbamoyltransferase, at 1,856,070 to 1,857,917 _RS10645 SGL_RS10650: SGL_RS10650 - DUF2808 domain-containing protein, at 1,858,047 to 1,858,604 _RS10650 SGL_RS10655: SGL_RS10655 - FtsW/RodA/SpoVE family cell cycle protein, at 1,858,609 to 1,859,790 _RS10655 Position (kb) 1856 1857 1858Strain fitness (log2 ratio) -1 0 1at 1856.241 kb on + strandat 1856.291 kb on + strand, within SGL_RS10645at 1856.462 kb on + strand, within SGL_RS10645at 1856.531 kb on + strand, within SGL_RS10645at 1856.792 kb on + strand, within SGL_RS10645at 1856.973 kb on + strand, within SGL_RS10645at 1856.981 kb on - strand, within SGL_RS10645at 1857.031 kb on + strand, within SGL_RS10645at 1857.133 kb on + strand, within SGL_RS10645at 1857.351 kb on + strand, within SGL_RS10645at 1857.405 kb on + strand, within SGL_RS10645at 1857.423 kb on - strand, within SGL_RS10645at 1857.444 kb on + strand, within SGL_RS10645at 1857.448 kb on - strand, within SGL_RS10645at 1857.461 kb on + strand, within SGL_RS10645at 1857.671 kb on + strand, within SGL_RS10645at 1857.856 kb on + strandat 1857.921 kb on + strandat 1857.980 kb on - strandat 1858.078 kb on + strandat 1858.117 kb on - strand, within SGL_RS10650at 1858.290 kb on - strand, within SGL_RS10650at 1858.492 kb on + strand, within SGL_RS10650

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,856,241 + +1.2
1,856,291 + SGL_RS10645 0.12 +0.6
1,856,462 + SGL_RS10645 0.21 -0.8
1,856,531 + SGL_RS10645 0.25 +0.4
1,856,792 + SGL_RS10645 0.39 +0.8
1,856,973 + SGL_RS10645 0.49 +0.5
1,856,981 - SGL_RS10645 0.49 +0.3
1,857,031 + SGL_RS10645 0.52 -0.1
1,857,133 + SGL_RS10645 0.58 +0.1
1,857,351 + SGL_RS10645 0.69 +0.5
1,857,405 + SGL_RS10645 0.72 +0.6
1,857,423 - SGL_RS10645 0.73 -0.2
1,857,444 + SGL_RS10645 0.74 -0.0
1,857,448 - SGL_RS10645 0.75 +0.2
1,857,461 + SGL_RS10645 0.75 +0.1
1,857,671 + SGL_RS10645 0.87 +0.6
1,857,856 + +0.1
1,857,921 + -1.0
1,857,980 - +0.0
1,858,078 + +0.1
1,858,117 - SGL_RS10650 0.13 -0.4
1,858,290 - SGL_RS10650 0.44 +0.1
1,858,492 + SGL_RS10650 0.80 -0.2

Or see this region's nucleotide sequence