Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10445 and SGL_RS10450 are separated by 51 nucleotides SGL_RS10450 and SGL_RS10455 are separated by 209 nucleotides SGL_RS10455 and SGL_RS10460 are separated by 17 nucleotides SGL_RS10460 and SGL_RS10465 are separated by 45 nucleotides
SGL_RS10445: SGL_RS10445 - L-threonylcarbamoyladenylate synthase, at 1,820,238 to 1,820,837
_RS10445
SGL_RS10450: SGL_RS10450 - TPM domain-containing protein, at 1,820,889 to 1,821,614
_RS10450
SGL_RS10455: SGL_RS10455 - hypothetical protein, at 1,821,824 to 1,822,036
_RS10455
SGL_RS10460: SGL_RS10460 - hypothetical protein, at 1,822,054 to 1,822,620
_RS10460
SGL_RS10465: SGL_RS10465 - universal stress protein, at 1,822,666 to 1,823,130
_RS10465
Position (kb) 1821
1822
1823 Strain fitness (log2 ratio) -1
0
1 at 1820.963 kb on - strand, within SGL_RS10450 at 1820.968 kb on - strand, within SGL_RS10450 at 1821.189 kb on - strand, within SGL_RS10450 at 1821.210 kb on + strand, within SGL_RS10450 at 1821.241 kb on - strand, within SGL_RS10450 at 1821.512 kb on + strand, within SGL_RS10450 at 1821.646 kb on - strand at 1821.649 kb on + strand at 1821.676 kb on + strand at 1821.748 kb on - strand at 1821.891 kb on + strand, within SGL_RS10455 at 1821.983 kb on + strand, within SGL_RS10455 at 1821.989 kb on + strand, within SGL_RS10455 at 1821.997 kb on - strand, within SGL_RS10455 at 1822.091 kb on - strand at 1822.107 kb on + strand at 1822.172 kb on + strand, within SGL_RS10460 at 1822.172 kb on + strand, within SGL_RS10460 at 1822.174 kb on + strand, within SGL_RS10460 at 1822.180 kb on - strand, within SGL_RS10460 at 1822.180 kb on - strand, within SGL_RS10460 at 1822.180 kb on - strand, within SGL_RS10460 at 1822.448 kb on + strand, within SGL_RS10460 at 1822.606 kb on + strand at 1822.664 kb on + strand at 1822.724 kb on - strand, within SGL_RS10465 at 1822.854 kb on - strand, within SGL_RS10465 at 1822.897 kb on + strand, within SGL_RS10465 at 1822.905 kb on - strand, within SGL_RS10465 at 1823.023 kb on - strand, within SGL_RS10465
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 1,820,963 - SGL_RS10450 0.10 +0.2 1,820,968 - SGL_RS10450 0.11 -0.4 1,821,189 - SGL_RS10450 0.41 -0.0 1,821,210 + SGL_RS10450 0.44 +0.1 1,821,241 - SGL_RS10450 0.48 +0.1 1,821,512 + SGL_RS10450 0.86 -0.7 1,821,646 - -0.1 1,821,649 + +0.2 1,821,676 + +0.4 1,821,748 - -0.5 1,821,891 + SGL_RS10455 0.31 +0.5 1,821,983 + SGL_RS10455 0.75 +0.4 1,821,989 + SGL_RS10455 0.77 +0.5 1,821,997 - SGL_RS10455 0.81 +0.3 1,822,091 - -0.2 1,822,107 + +0.2 1,822,172 + SGL_RS10460 0.21 -0.0 1,822,172 + SGL_RS10460 0.21 -0.0 1,822,174 + SGL_RS10460 0.21 -0.3 1,822,180 - SGL_RS10460 0.22 +0.2 1,822,180 - SGL_RS10460 0.22 +0.2 1,822,180 - SGL_RS10460 0.22 -0.1 1,822,448 + SGL_RS10460 0.69 +0.0 1,822,606 + +0.5 1,822,664 + +0.3 1,822,724 - SGL_RS10465 0.12 +0.5 1,822,854 - SGL_RS10465 0.40 +0.2 1,822,897 + SGL_RS10465 0.50 -0.1 1,822,905 - SGL_RS10465 0.51 -0.0 1,823,023 - SGL_RS10465 0.77 +0.0
Or see this region's nucleotide sequence