Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10385

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10380 and SGL_RS10385 are separated by 260 nucleotidesSGL_RS10385 and SGL_RS10390 are separated by 64 nucleotides SGL_RS10380: SGL_RS10380 - oxygen-independent coproporphyrinogen III oxidase, at 1,802,742 to 1,804,142 _RS10380 SGL_RS10385: SGL_RS10385 - heme oxygenase (biliverdin-producing), at 1,804,403 to 1,805,155 _RS10385 SGL_RS10390: SGL_RS10390 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase, at 1,805,220 to 1,806,296 _RS10390 Position (kb) 1804 1805 1806Strain fitness (log2 ratio) -1 0 1at 1803.435 kb on - strand, within SGL_RS10380at 1803.922 kb on - strand, within SGL_RS10380at 1803.998 kb on + strand, within SGL_RS10380at 1804.420 kb on + strandat 1804.660 kb on + strand, within SGL_RS10385at 1805.386 kb on - strand, within SGL_RS10390at 1805.506 kb on - strand, within SGL_RS10390at 1805.560 kb on - strand, within SGL_RS10390at 1806.018 kb on - strand, within SGL_RS10390

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,803,435 - SGL_RS10380 0.49 -0.0
1,803,922 - SGL_RS10380 0.84 +0.1
1,803,998 + SGL_RS10380 0.90 +0.0
1,804,420 + +0.4
1,804,660 + SGL_RS10385 0.34 +0.6
1,805,386 - SGL_RS10390 0.15 -0.1
1,805,506 - SGL_RS10390 0.27 -0.8
1,805,560 - SGL_RS10390 0.32 +0.4
1,806,018 - SGL_RS10390 0.74 -0.4

Or see this region's nucleotide sequence