Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10315

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10305 and SGL_RS10310 are separated by 59 nucleotidesSGL_RS10310 and SGL_RS10315 are separated by 274 nucleotidesSGL_RS10315 and SGL_RS10320 are separated by 192 nucleotides SGL_RS10305: SGL_RS10305 - PIN/TRAM domain-containing protein, at 1,783,855 to 1,784,934 _RS10305 SGL_RS10310: SGL_RS10310 - hypothetical protein, at 1,784,994 to 1,785,560 _RS10310 SGL_RS10315: SGL_RS10315 - hypothetical protein, at 1,785,835 to 1,788,357 _RS10315 SGL_RS10320: SGL_RS10320 - ribosome biogenesis GTPase Der, at 1,788,550 to 1,789,908 _RS10320 Position (kb) 1785 1786 1787 1788 1789Strain fitness (log2 ratio) -2 -1 0 1at 1784.991 kb on + strandat 1784.991 kb on + strandat 1785.162 kb on - strand, within SGL_RS10310at 1785.291 kb on + strand, within SGL_RS10310at 1785.319 kb on - strand, within SGL_RS10310at 1785.356 kb on - strand, within SGL_RS10310at 1785.671 kb on + strandat 1785.679 kb on - strandat 1785.726 kb on - strandat 1785.763 kb on + strandat 1785.987 kb on - strandat 1785.996 kb on + strandat 1786.137 kb on - strand, within SGL_RS10315at 1786.299 kb on - strand, within SGL_RS10315at 1786.326 kb on - strand, within SGL_RS10315at 1786.437 kb on + strand, within SGL_RS10315at 1786.438 kb on - strand, within SGL_RS10315at 1786.559 kb on + strand, within SGL_RS10315at 1786.632 kb on + strand, within SGL_RS10315at 1786.640 kb on - strand, within SGL_RS10315at 1786.678 kb on - strand, within SGL_RS10315at 1786.689 kb on - strand, within SGL_RS10315at 1786.933 kb on + strand, within SGL_RS10315at 1786.968 kb on - strand, within SGL_RS10315at 1787.001 kb on - strand, within SGL_RS10315at 1787.647 kb on + strand, within SGL_RS10315at 1787.675 kb on - strand, within SGL_RS10315at 1787.776 kb on - strand, within SGL_RS10315at 1787.847 kb on + strand, within SGL_RS10315at 1787.871 kb on - strand, within SGL_RS10315at 1788.071 kb on - strand, within SGL_RS10315at 1788.071 kb on - strand, within SGL_RS10315at 1788.144 kb on - strandat 1788.202 kb on + strandat 1788.202 kb on + strandat 1788.289 kb on + strandat 1788.296 kb on + strandat 1789.021 kb on + strand, within SGL_RS10320at 1789.100 kb on + strand, within SGL_RS10320at 1789.178 kb on + strand, within SGL_RS10320at 1789.186 kb on - strand, within SGL_RS10320

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,784,991 + -0.7
1,784,991 + -0.0
1,785,162 - SGL_RS10310 0.30 +0.2
1,785,291 + SGL_RS10310 0.52 +0.3
1,785,319 - SGL_RS10310 0.57 +0.3
1,785,356 - SGL_RS10310 0.64 +0.0
1,785,671 + -0.0
1,785,679 - -0.2
1,785,726 - +0.3
1,785,763 + +0.2
1,785,987 - -0.6
1,785,996 + +0.3
1,786,137 - SGL_RS10315 0.12 +0.6
1,786,299 - SGL_RS10315 0.18 +0.5
1,786,326 - SGL_RS10315 0.19 +0.5
1,786,437 + SGL_RS10315 0.24 +0.3
1,786,438 - SGL_RS10315 0.24 +0.2
1,786,559 + SGL_RS10315 0.29 +0.4
1,786,632 + SGL_RS10315 0.32 +0.9
1,786,640 - SGL_RS10315 0.32 +1.1
1,786,678 - SGL_RS10315 0.33 +0.4
1,786,689 - SGL_RS10315 0.34 +0.8
1,786,933 + SGL_RS10315 0.44 +0.7
1,786,968 - SGL_RS10315 0.45 +0.6
1,787,001 - SGL_RS10315 0.46 +0.4
1,787,647 + SGL_RS10315 0.72 +0.4
1,787,675 - SGL_RS10315 0.73 +0.8
1,787,776 - SGL_RS10315 0.77 +0.3
1,787,847 + SGL_RS10315 0.80 +0.9
1,787,871 - SGL_RS10315 0.81 +0.4
1,788,071 - SGL_RS10315 0.89 +0.6
1,788,071 - SGL_RS10315 0.89 +0.9
1,788,144 - +0.5
1,788,202 + -0.7
1,788,202 + +0.5
1,788,289 + +0.7
1,788,296 + +0.8
1,789,021 + SGL_RS10320 0.35 -2.6
1,789,100 + SGL_RS10320 0.40 -1.0
1,789,178 + SGL_RS10320 0.46 -2.4
1,789,186 - SGL_RS10320 0.47 -1.4

Or see this region's nucleotide sequence