Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09755 and SGL_RS09760 are separated by 76 nucleotides SGL_RS09760 and SGL_RS19200 are separated by 794 nucleotides
SGL_RS09755: SGL_RS09755 - bidirectional NAD-reducing hydrogenase diaphorase subunit HoxF, at 1,676,366 to 1,677,967
_RS09755
SGL_RS09760: SGL_RS09760 - bidirectional hydrogenase complex protein HoxE, at 1,678,044 to 1,678,565
_RS09760
SGL_RS19200: SGL_RS19200 - IS5 family transposase, at 1,679,360 to 1,679,938
_RS19200
Position (kb)
1678
1679 Strain fitness (log2 ratio)
-1
0
1 at 1677.274 kb on + strand, within SGL_RS09755 at 1677.289 kb on - strand, within SGL_RS09755 at 1677.290 kb on + strand, within SGL_RS09755 at 1677.313 kb on - strand, within SGL_RS09755 at 1677.329 kb on - strand, within SGL_RS09755 at 1677.369 kb on + strand, within SGL_RS09755 at 1677.411 kb on + strand, within SGL_RS09755 at 1677.452 kb on - strand, within SGL_RS09755 at 1677.466 kb on - strand, within SGL_RS09755 at 1677.501 kb on - strand, within SGL_RS09755 at 1677.537 kb on - strand, within SGL_RS09755 at 1677.605 kb on + strand, within SGL_RS09755 at 1677.652 kb on - strand, within SGL_RS09755 at 1677.715 kb on - strand, within SGL_RS09755 at 1677.715 kb on - strand, within SGL_RS09755 at 1678.065 kb on - strand at 1678.109 kb on - strand, within SGL_RS09760 at 1678.116 kb on + strand, within SGL_RS09760 at 1678.148 kb on + strand, within SGL_RS09760 at 1678.209 kb on + strand, within SGL_RS09760 at 1678.231 kb on - strand, within SGL_RS09760 at 1678.376 kb on + strand, within SGL_RS09760 at 1678.376 kb on + strand, within SGL_RS09760 at 1678.384 kb on - strand, within SGL_RS09760 at 1678.389 kb on - strand, within SGL_RS09760 at 1678.455 kb on - strand, within SGL_RS09760 at 1678.538 kb on + strand at 1678.625 kb on - strand at 1678.663 kb on - strand at 1679.090 kb on + strand at 1679.099 kb on + strand at 1679.369 kb on + strand at 1679.497 kb on - strand, within SGL_RS19200 at 1679.497 kb on - strand, within SGL_RS19200
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 1,677,274 + SGL_RS09755 0.57 +0.5 1,677,289 - SGL_RS09755 0.58 -0.5 1,677,290 + SGL_RS09755 0.58 -0.3 1,677,313 - SGL_RS09755 0.59 -0.0 1,677,329 - SGL_RS09755 0.60 +0.4 1,677,369 + SGL_RS09755 0.63 +0.5 1,677,411 + SGL_RS09755 0.65 -0.4 1,677,452 - SGL_RS09755 0.68 -0.3 1,677,466 - SGL_RS09755 0.69 +0.5 1,677,501 - SGL_RS09755 0.71 +0.1 1,677,537 - SGL_RS09755 0.73 -0.4 1,677,605 + SGL_RS09755 0.77 +0.8 1,677,652 - SGL_RS09755 0.80 +0.2 1,677,715 - SGL_RS09755 0.84 -0.2 1,677,715 - SGL_RS09755 0.84 -0.1 1,678,065 - +0.4 1,678,109 - SGL_RS09760 0.12 -0.2 1,678,116 + SGL_RS09760 0.14 -0.3 1,678,148 + SGL_RS09760 0.20 -0.6 1,678,209 + SGL_RS09760 0.32 -0.1 1,678,231 - SGL_RS09760 0.36 -0.5 1,678,376 + SGL_RS09760 0.64 +0.1 1,678,376 + SGL_RS09760 0.64 -0.8 1,678,384 - SGL_RS09760 0.65 -0.1 1,678,389 - SGL_RS09760 0.66 -0.3 1,678,455 - SGL_RS09760 0.79 -0.4 1,678,538 + -0.6 1,678,625 - +1.0 1,678,663 - +0.4 1,679,090 + -0.9 1,679,099 + -0.2 1,679,369 + +0.5 1,679,497 - SGL_RS19200 0.24 +0.3 1,679,497 - SGL_RS19200 0.24 -0.2
Or see this region's nucleotide sequence