Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09600 and SGL_RS09605 are separated by 137 nucleotides SGL_RS09605 and SGL_RS09610 are separated by 73 nucleotides SGL_RS09610 and SGL_RS09615 are separated by 41 nucleotides SGL_RS09615 and SGL_RS09620 are separated by 17 nucleotides
SGL_RS09600: SGL_RS09600 - 3-dehydroquinate synthase, at 1,643,682 to 1,644,767
_RS09600
SGL_RS09605: SGL_RS09605 - efflux RND transporter permease subunit, at 1,644,905 to 1,648,090
_RS09605
SGL_RS09610: SGL_RS09610 - hypothetical protein, at 1,648,164 to 1,648,337
_RS09610
SGL_RS09615: SGL_RS09615 - PIN domain-containing protein, at 1,648,379 to 1,648,663
_RS09615
SGL_RS09620: SGL_RS09620 - hypothetical protein, at 1,648,681 to 1,649,439
_RS09620
Position (kb)
1644
1645
1646
1647
1648
1649 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1644.732 kb on - strand at 1644.803 kb on + strand at 1644.811 kb on - strand at 1644.880 kb on - strand at 1645.062 kb on - strand at 1645.078 kb on + strand at 1645.081 kb on - strand at 1645.111 kb on + strand at 1645.318 kb on - strand, within SGL_RS09605 at 1645.427 kb on - strand, within SGL_RS09605 at 1645.470 kb on + strand, within SGL_RS09605 at 1645.470 kb on + strand, within SGL_RS09605 at 1645.493 kb on + strand, within SGL_RS09605 at 1645.567 kb on - strand, within SGL_RS09605 at 1645.773 kb on + strand, within SGL_RS09605 at 1645.874 kb on + strand, within SGL_RS09605 at 1646.011 kb on - strand, within SGL_RS09605 at 1646.053 kb on - strand, within SGL_RS09605 at 1646.093 kb on - strand, within SGL_RS09605 at 1646.093 kb on - strand, within SGL_RS09605 at 1646.103 kb on - strand, within SGL_RS09605 at 1646.274 kb on - strand, within SGL_RS09605 at 1646.355 kb on - strand, within SGL_RS09605 at 1646.417 kb on - strand, within SGL_RS09605 at 1646.459 kb on + strand, within SGL_RS09605 at 1646.467 kb on - strand, within SGL_RS09605 at 1646.571 kb on + strand, within SGL_RS09605 at 1646.589 kb on - strand, within SGL_RS09605 at 1646.625 kb on + strand, within SGL_RS09605 at 1646.639 kb on + strand, within SGL_RS09605 at 1646.670 kb on + strand, within SGL_RS09605 at 1646.768 kb on - strand, within SGL_RS09605 at 1646.785 kb on - strand, within SGL_RS09605 at 1646.788 kb on + strand, within SGL_RS09605 at 1646.796 kb on - strand, within SGL_RS09605 at 1646.821 kb on - strand, within SGL_RS09605 at 1646.821 kb on - strand, within SGL_RS09605 at 1646.828 kb on + strand, within SGL_RS09605 at 1646.836 kb on - strand, within SGL_RS09605 at 1646.914 kb on - strand, within SGL_RS09605 at 1646.942 kb on - strand, within SGL_RS09605 at 1646.980 kb on - strand, within SGL_RS09605 at 1646.982 kb on + strand, within SGL_RS09605 at 1647.002 kb on - strand, within SGL_RS09605 at 1647.054 kb on - strand, within SGL_RS09605 at 1647.111 kb on + strand, within SGL_RS09605 at 1647.135 kb on - strand, within SGL_RS09605 at 1647.171 kb on + strand, within SGL_RS09605 at 1647.193 kb on + strand, within SGL_RS09605 at 1647.216 kb on - strand, within SGL_RS09605 at 1647.230 kb on - strand, within SGL_RS09605 at 1647.280 kb on + strand, within SGL_RS09605 at 1647.405 kb on + strand, within SGL_RS09605 at 1647.448 kb on + strand, within SGL_RS09605 at 1647.448 kb on + strand, within SGL_RS09605 at 1647.512 kb on + strand, within SGL_RS09605 at 1647.754 kb on + strand, within SGL_RS09605 at 1647.968 kb on + strand at 1647.976 kb on - strand at 1648.002 kb on + strand at 1648.027 kb on + strand at 1648.033 kb on + strand at 1648.034 kb on - strand at 1648.081 kb on - strand at 1648.169 kb on + strand at 1648.299 kb on - strand, within SGL_RS09610 at 1648.658 kb on + strand at 1648.666 kb on - strand at 1648.666 kb on - strand at 1648.882 kb on + strand, within SGL_RS09620
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 1,644,732 - -0.4 1,644,803 + +0.6 1,644,811 - +0.1 1,644,880 - -0.2 1,645,062 - -0.1 1,645,078 + +0.1 1,645,081 - +2.6 1,645,111 + +0.3 1,645,318 - SGL_RS09605 0.13 +1.0 1,645,427 - SGL_RS09605 0.16 +0.3 1,645,470 + SGL_RS09605 0.18 +1.1 1,645,470 + SGL_RS09605 0.18 +0.6 1,645,493 + SGL_RS09605 0.18 +1.4 1,645,567 - SGL_RS09605 0.21 +2.6 1,645,773 + SGL_RS09605 0.27 -0.4 1,645,874 + SGL_RS09605 0.30 +0.8 1,646,011 - SGL_RS09605 0.35 -0.1 1,646,053 - SGL_RS09605 0.36 +0.4 1,646,093 - SGL_RS09605 0.37 +0.8 1,646,093 - SGL_RS09605 0.37 -0.3 1,646,103 - SGL_RS09605 0.38 +0.6 1,646,274 - SGL_RS09605 0.43 -0.4 1,646,355 - SGL_RS09605 0.46 +0.3 1,646,417 - SGL_RS09605 0.47 +0.6 1,646,459 + SGL_RS09605 0.49 +1.3 1,646,467 - SGL_RS09605 0.49 +0.9 1,646,571 + SGL_RS09605 0.52 +0.8 1,646,589 - SGL_RS09605 0.53 -0.9 1,646,625 + SGL_RS09605 0.54 +1.0 1,646,639 + SGL_RS09605 0.54 -0.9 1,646,670 + SGL_RS09605 0.55 +0.7 1,646,768 - SGL_RS09605 0.58 +0.4 1,646,785 - SGL_RS09605 0.59 +0.6 1,646,788 + SGL_RS09605 0.59 +1.3 1,646,796 - SGL_RS09605 0.59 +0.9 1,646,821 - SGL_RS09605 0.60 +0.9 1,646,821 - SGL_RS09605 0.60 +1.1 1,646,828 + SGL_RS09605 0.60 +1.8 1,646,836 - SGL_RS09605 0.61 +2.6 1,646,914 - SGL_RS09605 0.63 -0.4 1,646,942 - SGL_RS09605 0.64 -0.6 1,646,980 - SGL_RS09605 0.65 -2.0 1,646,982 + SGL_RS09605 0.65 +1.6 1,647,002 - SGL_RS09605 0.66 +0.9 1,647,054 - SGL_RS09605 0.67 +0.6 1,647,111 + SGL_RS09605 0.69 +0.6 1,647,135 - SGL_RS09605 0.70 +0.8 1,647,171 + SGL_RS09605 0.71 -0.9 1,647,193 + SGL_RS09605 0.72 +1.3 1,647,216 - SGL_RS09605 0.73 -0.3 1,647,230 - SGL_RS09605 0.73 +0.2 1,647,280 + SGL_RS09605 0.75 -0.4 1,647,405 + SGL_RS09605 0.78 +0.6 1,647,448 + SGL_RS09605 0.80 +1.1 1,647,448 + SGL_RS09605 0.80 -0.3 1,647,512 + SGL_RS09605 0.82 +1.1 1,647,754 + SGL_RS09605 0.89 +1.9 1,647,968 + -0.0 1,647,976 - -0.1 1,648,002 + -0.0 1,648,027 + +1.0 1,648,033 + +0.7 1,648,034 - -0.6 1,648,081 - -0.5 1,648,169 + +0.2 1,648,299 - SGL_RS09610 0.78 -0.5 1,648,658 + +0.1 1,648,666 - +0.1 1,648,666 - -0.2 1,648,882 + SGL_RS09620 0.26 +0.1
Or see this region's nucleotide sequence