Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09605

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS09600 and SGL_RS09605 are separated by 137 nucleotidesSGL_RS09605 and SGL_RS09610 are separated by 73 nucleotidesSGL_RS09610 and SGL_RS09615 are separated by 41 nucleotidesSGL_RS09615 and SGL_RS09620 are separated by 17 nucleotides SGL_RS09600: SGL_RS09600 - 3-dehydroquinate synthase, at 1,643,682 to 1,644,767 _RS09600 SGL_RS09605: SGL_RS09605 - efflux RND transporter permease subunit, at 1,644,905 to 1,648,090 _RS09605 SGL_RS09610: SGL_RS09610 - hypothetical protein, at 1,648,164 to 1,648,337 _RS09610 SGL_RS09615: SGL_RS09615 - PIN domain-containing protein, at 1,648,379 to 1,648,663 _RS09615 SGL_RS09620: SGL_RS09620 - hypothetical protein, at 1,648,681 to 1,649,439 _RS09620 Position (kb) 1644 1645 1646 1647 1648 1649Strain fitness (log2 ratio) -2 -1 0 1 2at 1644.732 kb on - strandat 1644.803 kb on + strandat 1644.811 kb on - strandat 1644.880 kb on - strandat 1645.062 kb on - strandat 1645.078 kb on + strandat 1645.081 kb on - strandat 1645.111 kb on + strandat 1645.318 kb on - strand, within SGL_RS09605at 1645.427 kb on - strand, within SGL_RS09605at 1645.470 kb on + strand, within SGL_RS09605at 1645.470 kb on + strand, within SGL_RS09605at 1645.493 kb on + strand, within SGL_RS09605at 1645.567 kb on - strand, within SGL_RS09605at 1645.773 kb on + strand, within SGL_RS09605at 1645.874 kb on + strand, within SGL_RS09605at 1646.011 kb on - strand, within SGL_RS09605at 1646.053 kb on - strand, within SGL_RS09605at 1646.093 kb on - strand, within SGL_RS09605at 1646.093 kb on - strand, within SGL_RS09605at 1646.103 kb on - strand, within SGL_RS09605at 1646.274 kb on - strand, within SGL_RS09605at 1646.355 kb on - strand, within SGL_RS09605at 1646.417 kb on - strand, within SGL_RS09605at 1646.459 kb on + strand, within SGL_RS09605at 1646.467 kb on - strand, within SGL_RS09605at 1646.571 kb on + strand, within SGL_RS09605at 1646.589 kb on - strand, within SGL_RS09605at 1646.625 kb on + strand, within SGL_RS09605at 1646.639 kb on + strand, within SGL_RS09605at 1646.670 kb on + strand, within SGL_RS09605at 1646.768 kb on - strand, within SGL_RS09605at 1646.785 kb on - strand, within SGL_RS09605at 1646.788 kb on + strand, within SGL_RS09605at 1646.796 kb on - strand, within SGL_RS09605at 1646.821 kb on - strand, within SGL_RS09605at 1646.821 kb on - strand, within SGL_RS09605at 1646.828 kb on + strand, within SGL_RS09605at 1646.836 kb on - strand, within SGL_RS09605at 1646.914 kb on - strand, within SGL_RS09605at 1646.942 kb on - strand, within SGL_RS09605at 1646.980 kb on - strand, within SGL_RS09605at 1646.982 kb on + strand, within SGL_RS09605at 1647.002 kb on - strand, within SGL_RS09605at 1647.054 kb on - strand, within SGL_RS09605at 1647.111 kb on + strand, within SGL_RS09605at 1647.135 kb on - strand, within SGL_RS09605at 1647.171 kb on + strand, within SGL_RS09605at 1647.193 kb on + strand, within SGL_RS09605at 1647.216 kb on - strand, within SGL_RS09605at 1647.230 kb on - strand, within SGL_RS09605at 1647.280 kb on + strand, within SGL_RS09605at 1647.405 kb on + strand, within SGL_RS09605at 1647.448 kb on + strand, within SGL_RS09605at 1647.448 kb on + strand, within SGL_RS09605at 1647.512 kb on + strand, within SGL_RS09605at 1647.754 kb on + strand, within SGL_RS09605at 1647.968 kb on + strandat 1647.976 kb on - strandat 1648.002 kb on + strandat 1648.027 kb on + strandat 1648.033 kb on + strandat 1648.034 kb on - strandat 1648.081 kb on - strandat 1648.169 kb on + strandat 1648.299 kb on - strand, within SGL_RS09610at 1648.658 kb on + strandat 1648.666 kb on - strandat 1648.666 kb on - strandat 1648.882 kb on + strand, within SGL_RS09620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
remove
1,644,732 - -0.4
1,644,803 + +0.6
1,644,811 - +0.1
1,644,880 - -0.2
1,645,062 - -0.1
1,645,078 + +0.1
1,645,081 - +2.6
1,645,111 + +0.3
1,645,318 - SGL_RS09605 0.13 +1.0
1,645,427 - SGL_RS09605 0.16 +0.3
1,645,470 + SGL_RS09605 0.18 +1.1
1,645,470 + SGL_RS09605 0.18 +0.6
1,645,493 + SGL_RS09605 0.18 +1.4
1,645,567 - SGL_RS09605 0.21 +2.6
1,645,773 + SGL_RS09605 0.27 -0.4
1,645,874 + SGL_RS09605 0.30 +0.8
1,646,011 - SGL_RS09605 0.35 -0.1
1,646,053 - SGL_RS09605 0.36 +0.4
1,646,093 - SGL_RS09605 0.37 +0.8
1,646,093 - SGL_RS09605 0.37 -0.3
1,646,103 - SGL_RS09605 0.38 +0.6
1,646,274 - SGL_RS09605 0.43 -0.4
1,646,355 - SGL_RS09605 0.46 +0.3
1,646,417 - SGL_RS09605 0.47 +0.6
1,646,459 + SGL_RS09605 0.49 +1.3
1,646,467 - SGL_RS09605 0.49 +0.9
1,646,571 + SGL_RS09605 0.52 +0.8
1,646,589 - SGL_RS09605 0.53 -0.9
1,646,625 + SGL_RS09605 0.54 +1.0
1,646,639 + SGL_RS09605 0.54 -0.9
1,646,670 + SGL_RS09605 0.55 +0.7
1,646,768 - SGL_RS09605 0.58 +0.4
1,646,785 - SGL_RS09605 0.59 +0.6
1,646,788 + SGL_RS09605 0.59 +1.3
1,646,796 - SGL_RS09605 0.59 +0.9
1,646,821 - SGL_RS09605 0.60 +0.9
1,646,821 - SGL_RS09605 0.60 +1.1
1,646,828 + SGL_RS09605 0.60 +1.8
1,646,836 - SGL_RS09605 0.61 +2.6
1,646,914 - SGL_RS09605 0.63 -0.4
1,646,942 - SGL_RS09605 0.64 -0.6
1,646,980 - SGL_RS09605 0.65 -2.0
1,646,982 + SGL_RS09605 0.65 +1.6
1,647,002 - SGL_RS09605 0.66 +0.9
1,647,054 - SGL_RS09605 0.67 +0.6
1,647,111 + SGL_RS09605 0.69 +0.6
1,647,135 - SGL_RS09605 0.70 +0.8
1,647,171 + SGL_RS09605 0.71 -0.9
1,647,193 + SGL_RS09605 0.72 +1.3
1,647,216 - SGL_RS09605 0.73 -0.3
1,647,230 - SGL_RS09605 0.73 +0.2
1,647,280 + SGL_RS09605 0.75 -0.4
1,647,405 + SGL_RS09605 0.78 +0.6
1,647,448 + SGL_RS09605 0.80 +1.1
1,647,448 + SGL_RS09605 0.80 -0.3
1,647,512 + SGL_RS09605 0.82 +1.1
1,647,754 + SGL_RS09605 0.89 +1.9
1,647,968 + -0.0
1,647,976 - -0.1
1,648,002 + -0.0
1,648,027 + +1.0
1,648,033 + +0.7
1,648,034 - -0.6
1,648,081 - -0.5
1,648,169 + +0.2
1,648,299 - SGL_RS09610 0.78 -0.5
1,648,658 + +0.1
1,648,666 - +0.1
1,648,666 - -0.2
1,648,882 + SGL_RS09620 0.26 +0.1

Or see this region's nucleotide sequence