Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09540

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09530 and SGL_RS09535 are separated by 7 nucleotidesSGL_RS09535 and SGL_RS09540 are separated by 47 nucleotidesSGL_RS09540 and SGL_RS09545 overlap by 4 nucleotidesSGL_RS09545 and SGL_RS09550 are separated by 13 nucleotides SGL_RS09530: SGL_RS09530 - glycosyltransferase, at 1,631,271 to 1,632,530 _RS09530 SGL_RS09535: SGL_RS09535 - FkbM family methyltransferase, at 1,632,538 to 1,633,374 _RS09535 SGL_RS09540: SGL_RS09540 - glycosyltransferase, at 1,633,422 to 1,634,414 _RS09540 SGL_RS09545: SGL_RS09545 - cyclase family protein, at 1,634,411 to 1,635,058 _RS09545 SGL_RS09550: SGL_RS09550 - acylneuraminate cytidylyltransferase, at 1,635,072 to 1,635,749 _RS09550 Position (kb) 1633 1634 1635Strain fitness (log2 ratio) -1 0 1at 1632.596 kb on + strandat 1632.611 kb on + strandat 1632.630 kb on - strand, within SGL_RS09535at 1632.760 kb on - strand, within SGL_RS09535at 1632.780 kb on + strand, within SGL_RS09535at 1632.791 kb on + strand, within SGL_RS09535at 1632.823 kb on - strand, within SGL_RS09535at 1632.967 kb on - strand, within SGL_RS09535at 1633.059 kb on + strand, within SGL_RS09535at 1633.067 kb on - strand, within SGL_RS09535at 1633.069 kb on - strand, within SGL_RS09535at 1633.137 kb on - strand, within SGL_RS09535at 1633.165 kb on - strand, within SGL_RS09535at 1633.182 kb on - strand, within SGL_RS09535at 1633.201 kb on + strand, within SGL_RS09535at 1633.476 kb on + strandat 1633.545 kb on + strand, within SGL_RS09540at 1633.554 kb on + strand, within SGL_RS09540at 1633.566 kb on + strand, within SGL_RS09540at 1633.571 kb on + strand, within SGL_RS09540at 1633.649 kb on + strand, within SGL_RS09540at 1633.652 kb on - strand, within SGL_RS09540at 1633.693 kb on - strand, within SGL_RS09540at 1633.706 kb on - strand, within SGL_RS09540at 1633.706 kb on - strand, within SGL_RS09540at 1633.777 kb on + strand, within SGL_RS09540at 1633.778 kb on - strand, within SGL_RS09540at 1633.860 kb on + strand, within SGL_RS09540at 1633.926 kb on - strand, within SGL_RS09540at 1633.941 kb on + strand, within SGL_RS09540at 1633.949 kb on - strand, within SGL_RS09540at 1633.949 kb on - strand, within SGL_RS09540at 1633.949 kb on - strand, within SGL_RS09540at 1633.954 kb on - strand, within SGL_RS09540at 1634.010 kb on + strand, within SGL_RS09540at 1634.029 kb on + strand, within SGL_RS09540at 1634.029 kb on + strand, within SGL_RS09540at 1634.029 kb on + strand, within SGL_RS09540at 1634.031 kb on - strand, within SGL_RS09540at 1634.037 kb on - strand, within SGL_RS09540at 1634.037 kb on - strand, within SGL_RS09540at 1634.122 kb on + strand, within SGL_RS09540at 1634.132 kb on + strand, within SGL_RS09540at 1634.134 kb on + strand, within SGL_RS09540at 1634.134 kb on + strand, within SGL_RS09540at 1634.142 kb on - strand, within SGL_RS09540at 1634.197 kb on - strand, within SGL_RS09540at 1634.243 kb on - strand, within SGL_RS09540at 1634.263 kb on - strand, within SGL_RS09540at 1634.509 kb on - strand, within SGL_RS09545at 1634.510 kb on - strand, within SGL_RS09545at 1634.538 kb on + strand, within SGL_RS09545at 1634.543 kb on + strand, within SGL_RS09545at 1634.546 kb on - strand, within SGL_RS09545at 1634.551 kb on - strand, within SGL_RS09545at 1634.618 kb on + strand, within SGL_RS09545at 1634.618 kb on + strand, within SGL_RS09545at 1634.644 kb on - strand, within SGL_RS09545at 1634.644 kb on - strand, within SGL_RS09545at 1634.668 kb on - strand, within SGL_RS09545at 1634.689 kb on + strand, within SGL_RS09545at 1634.715 kb on - strand, within SGL_RS09545at 1634.719 kb on - strand, within SGL_RS09545at 1634.865 kb on + strand, within SGL_RS09545at 1634.901 kb on - strand, within SGL_RS09545at 1634.927 kb on - strand, within SGL_RS09545at 1634.929 kb on + strand, within SGL_RS09545at 1634.950 kb on + strand, within SGL_RS09545at 1634.950 kb on + strand, within SGL_RS09545at 1635.095 kb on + strandat 1635.116 kb on - strandat 1635.180 kb on + strand, within SGL_RS09550at 1635.188 kb on - strand, within SGL_RS09550at 1635.197 kb on - strand, within SGL_RS09550at 1635.250 kb on + strand, within SGL_RS09550at 1635.258 kb on + strand, within SGL_RS09550at 1635.258 kb on + strand, within SGL_RS09550at 1635.281 kb on + strand, within SGL_RS09550at 1635.291 kb on - strand, within SGL_RS09550at 1635.312 kb on + strand, within SGL_RS09550at 1635.312 kb on + strand, within SGL_RS09550at 1635.312 kb on + strand, within SGL_RS09550at 1635.320 kb on - strand, within SGL_RS09550at 1635.338 kb on + strand, within SGL_RS09550at 1635.346 kb on + strand, within SGL_RS09550

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,632,596 + -0.2
1,632,611 + +1.2
1,632,630 - SGL_RS09535 0.11 +0.1
1,632,760 - SGL_RS09535 0.27 +0.6
1,632,780 + SGL_RS09535 0.29 +0.7
1,632,791 + SGL_RS09535 0.30 -0.1
1,632,823 - SGL_RS09535 0.34 +0.3
1,632,967 - SGL_RS09535 0.51 -0.1
1,633,059 + SGL_RS09535 0.62 -0.0
1,633,067 - SGL_RS09535 0.63 +0.0
1,633,069 - SGL_RS09535 0.63 +0.1
1,633,137 - SGL_RS09535 0.72 -1.5
1,633,165 - SGL_RS09535 0.75 +0.3
1,633,182 - SGL_RS09535 0.77 -0.2
1,633,201 + SGL_RS09535 0.79 +0.4
1,633,476 + -0.1
1,633,545 + SGL_RS09540 0.12 +0.3
1,633,554 + SGL_RS09540 0.13 +0.6
1,633,566 + SGL_RS09540 0.15 +0.4
1,633,571 + SGL_RS09540 0.15 +0.4
1,633,649 + SGL_RS09540 0.23 +0.5
1,633,652 - SGL_RS09540 0.23 +0.1
1,633,693 - SGL_RS09540 0.27 +0.5
1,633,706 - SGL_RS09540 0.29 +0.3
1,633,706 - SGL_RS09540 0.29 +0.2
1,633,777 + SGL_RS09540 0.36 +0.5
1,633,778 - SGL_RS09540 0.36 +0.8
1,633,860 + SGL_RS09540 0.44 +0.4
1,633,926 - SGL_RS09540 0.51 +0.3
1,633,941 + SGL_RS09540 0.52 +0.2
1,633,949 - SGL_RS09540 0.53 +0.2
1,633,949 - SGL_RS09540 0.53 -0.2
1,633,949 - SGL_RS09540 0.53 +0.4
1,633,954 - SGL_RS09540 0.54 +0.2
1,634,010 + SGL_RS09540 0.59 +0.0
1,634,029 + SGL_RS09540 0.61 +0.4
1,634,029 + SGL_RS09540 0.61 +0.5
1,634,029 + SGL_RS09540 0.61 +0.1
1,634,031 - SGL_RS09540 0.61 +0.1
1,634,037 - SGL_RS09540 0.62 +0.6
1,634,037 - SGL_RS09540 0.62 +0.5
1,634,122 + SGL_RS09540 0.70 +0.3
1,634,132 + SGL_RS09540 0.72 +0.1
1,634,134 + SGL_RS09540 0.72 +1.3
1,634,134 + SGL_RS09540 0.72 +0.4
1,634,142 - SGL_RS09540 0.73 +0.3
1,634,197 - SGL_RS09540 0.78 +0.0
1,634,243 - SGL_RS09540 0.83 +0.3
1,634,263 - SGL_RS09540 0.85 +0.8
1,634,509 - SGL_RS09545 0.15 +0.1
1,634,510 - SGL_RS09545 0.15 -0.0
1,634,538 + SGL_RS09545 0.20 -0.3
1,634,543 + SGL_RS09545 0.20 +0.1
1,634,546 - SGL_RS09545 0.21 +0.1
1,634,551 - SGL_RS09545 0.22 -0.3
1,634,618 + SGL_RS09545 0.32 -0.1
1,634,618 + SGL_RS09545 0.32 -0.1
1,634,644 - SGL_RS09545 0.36 +0.2
1,634,644 - SGL_RS09545 0.36 +0.0
1,634,668 - SGL_RS09545 0.40 +0.3
1,634,689 + SGL_RS09545 0.43 -0.3
1,634,715 - SGL_RS09545 0.47 +0.5
1,634,719 - SGL_RS09545 0.48 +0.4
1,634,865 + SGL_RS09545 0.70 -0.5
1,634,901 - SGL_RS09545 0.76 -0.2
1,634,927 - SGL_RS09545 0.80 +0.0
1,634,929 + SGL_RS09545 0.80 +0.5
1,634,950 + SGL_RS09545 0.83 +0.2
1,634,950 + SGL_RS09545 0.83 -0.4
1,635,095 + -0.1
1,635,116 - -0.5
1,635,180 + SGL_RS09550 0.16 +0.1
1,635,188 - SGL_RS09550 0.17 +0.1
1,635,197 - SGL_RS09550 0.18 +0.2
1,635,250 + SGL_RS09550 0.26 -0.3
1,635,258 + SGL_RS09550 0.27 +0.3
1,635,258 + SGL_RS09550 0.27 -0.2
1,635,281 + SGL_RS09550 0.31 -0.1
1,635,291 - SGL_RS09550 0.32 -0.3
1,635,312 + SGL_RS09550 0.35 +0.1
1,635,312 + SGL_RS09550 0.35 -0.4
1,635,312 + SGL_RS09550 0.35 -0.1
1,635,320 - SGL_RS09550 0.37 -0.2
1,635,338 + SGL_RS09550 0.39 +0.7
1,635,346 + SGL_RS09550 0.40 -0.0

Or see this region's nucleotide sequence