Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09530 and SGL_RS09535 are separated by 7 nucleotides SGL_RS09535 and SGL_RS09540 are separated by 47 nucleotides SGL_RS09540 and SGL_RS09545 overlap by 4 nucleotides SGL_RS09545 and SGL_RS09550 are separated by 13 nucleotides
SGL_RS09530: SGL_RS09530 - glycosyltransferase, at 1,631,271 to 1,632,530
_RS09530
SGL_RS09535: SGL_RS09535 - FkbM family methyltransferase, at 1,632,538 to 1,633,374
_RS09535
SGL_RS09540: SGL_RS09540 - glycosyltransferase, at 1,633,422 to 1,634,414
_RS09540
SGL_RS09545: SGL_RS09545 - cyclase family protein, at 1,634,411 to 1,635,058
_RS09545
SGL_RS09550: SGL_RS09550 - acylneuraminate cytidylyltransferase, at 1,635,072 to 1,635,749
_RS09550
Position (kb)
1633
1634
1635 Strain fitness (log2 ratio)
-1
0
1 at 1632.596 kb on + strand at 1632.611 kb on + strand at 1632.630 kb on - strand, within SGL_RS09535 at 1632.760 kb on - strand, within SGL_RS09535 at 1632.780 kb on + strand, within SGL_RS09535 at 1632.791 kb on + strand, within SGL_RS09535 at 1632.823 kb on - strand, within SGL_RS09535 at 1632.967 kb on - strand, within SGL_RS09535 at 1633.059 kb on + strand, within SGL_RS09535 at 1633.067 kb on - strand, within SGL_RS09535 at 1633.069 kb on - strand, within SGL_RS09535 at 1633.137 kb on - strand, within SGL_RS09535 at 1633.165 kb on - strand, within SGL_RS09535 at 1633.182 kb on - strand, within SGL_RS09535 at 1633.201 kb on + strand, within SGL_RS09535 at 1633.476 kb on + strand at 1633.545 kb on + strand, within SGL_RS09540 at 1633.554 kb on + strand, within SGL_RS09540 at 1633.566 kb on + strand, within SGL_RS09540 at 1633.571 kb on + strand, within SGL_RS09540 at 1633.649 kb on + strand, within SGL_RS09540 at 1633.652 kb on - strand, within SGL_RS09540 at 1633.693 kb on - strand, within SGL_RS09540 at 1633.706 kb on - strand, within SGL_RS09540 at 1633.706 kb on - strand, within SGL_RS09540 at 1633.777 kb on + strand, within SGL_RS09540 at 1633.778 kb on - strand, within SGL_RS09540 at 1633.860 kb on + strand, within SGL_RS09540 at 1633.926 kb on - strand, within SGL_RS09540 at 1633.941 kb on + strand, within SGL_RS09540 at 1633.949 kb on - strand, within SGL_RS09540 at 1633.949 kb on - strand, within SGL_RS09540 at 1633.949 kb on - strand, within SGL_RS09540 at 1633.954 kb on - strand, within SGL_RS09540 at 1634.010 kb on + strand, within SGL_RS09540 at 1634.029 kb on + strand, within SGL_RS09540 at 1634.029 kb on + strand, within SGL_RS09540 at 1634.029 kb on + strand, within SGL_RS09540 at 1634.031 kb on - strand, within SGL_RS09540 at 1634.037 kb on - strand, within SGL_RS09540 at 1634.037 kb on - strand, within SGL_RS09540 at 1634.122 kb on + strand, within SGL_RS09540 at 1634.132 kb on + strand, within SGL_RS09540 at 1634.134 kb on + strand, within SGL_RS09540 at 1634.134 kb on + strand, within SGL_RS09540 at 1634.142 kb on - strand, within SGL_RS09540 at 1634.197 kb on - strand, within SGL_RS09540 at 1634.243 kb on - strand, within SGL_RS09540 at 1634.263 kb on - strand, within SGL_RS09540 at 1634.509 kb on - strand, within SGL_RS09545 at 1634.510 kb on - strand, within SGL_RS09545 at 1634.538 kb on + strand, within SGL_RS09545 at 1634.543 kb on + strand, within SGL_RS09545 at 1634.546 kb on - strand, within SGL_RS09545 at 1634.551 kb on - strand, within SGL_RS09545 at 1634.618 kb on + strand, within SGL_RS09545 at 1634.618 kb on + strand, within SGL_RS09545 at 1634.644 kb on - strand, within SGL_RS09545 at 1634.644 kb on - strand, within SGL_RS09545 at 1634.668 kb on - strand, within SGL_RS09545 at 1634.689 kb on + strand, within SGL_RS09545 at 1634.715 kb on - strand, within SGL_RS09545 at 1634.719 kb on - strand, within SGL_RS09545 at 1634.865 kb on + strand, within SGL_RS09545 at 1634.901 kb on - strand, within SGL_RS09545 at 1634.927 kb on - strand, within SGL_RS09545 at 1634.929 kb on + strand, within SGL_RS09545 at 1634.950 kb on + strand, within SGL_RS09545 at 1634.950 kb on + strand, within SGL_RS09545 at 1635.095 kb on + strand at 1635.116 kb on - strand at 1635.180 kb on + strand, within SGL_RS09550 at 1635.188 kb on - strand, within SGL_RS09550 at 1635.197 kb on - strand, within SGL_RS09550 at 1635.250 kb on + strand, within SGL_RS09550 at 1635.258 kb on + strand, within SGL_RS09550 at 1635.258 kb on + strand, within SGL_RS09550 at 1635.281 kb on + strand, within SGL_RS09550 at 1635.291 kb on - strand, within SGL_RS09550 at 1635.312 kb on + strand, within SGL_RS09550 at 1635.312 kb on + strand, within SGL_RS09550 at 1635.312 kb on + strand, within SGL_RS09550 at 1635.320 kb on - strand, within SGL_RS09550 at 1635.338 kb on + strand, within SGL_RS09550 at 1635.346 kb on + strand, within SGL_RS09550
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 1,632,596 + -0.2 1,632,611 + +1.2 1,632,630 - SGL_RS09535 0.11 +0.1 1,632,760 - SGL_RS09535 0.27 +0.6 1,632,780 + SGL_RS09535 0.29 +0.7 1,632,791 + SGL_RS09535 0.30 -0.1 1,632,823 - SGL_RS09535 0.34 +0.3 1,632,967 - SGL_RS09535 0.51 -0.1 1,633,059 + SGL_RS09535 0.62 -0.0 1,633,067 - SGL_RS09535 0.63 +0.0 1,633,069 - SGL_RS09535 0.63 +0.1 1,633,137 - SGL_RS09535 0.72 -1.5 1,633,165 - SGL_RS09535 0.75 +0.3 1,633,182 - SGL_RS09535 0.77 -0.2 1,633,201 + SGL_RS09535 0.79 +0.4 1,633,476 + -0.1 1,633,545 + SGL_RS09540 0.12 +0.3 1,633,554 + SGL_RS09540 0.13 +0.6 1,633,566 + SGL_RS09540 0.15 +0.4 1,633,571 + SGL_RS09540 0.15 +0.4 1,633,649 + SGL_RS09540 0.23 +0.5 1,633,652 - SGL_RS09540 0.23 +0.1 1,633,693 - SGL_RS09540 0.27 +0.5 1,633,706 - SGL_RS09540 0.29 +0.3 1,633,706 - SGL_RS09540 0.29 +0.2 1,633,777 + SGL_RS09540 0.36 +0.5 1,633,778 - SGL_RS09540 0.36 +0.8 1,633,860 + SGL_RS09540 0.44 +0.4 1,633,926 - SGL_RS09540 0.51 +0.3 1,633,941 + SGL_RS09540 0.52 +0.2 1,633,949 - SGL_RS09540 0.53 +0.2 1,633,949 - SGL_RS09540 0.53 -0.2 1,633,949 - SGL_RS09540 0.53 +0.4 1,633,954 - SGL_RS09540 0.54 +0.2 1,634,010 + SGL_RS09540 0.59 +0.0 1,634,029 + SGL_RS09540 0.61 +0.4 1,634,029 + SGL_RS09540 0.61 +0.5 1,634,029 + SGL_RS09540 0.61 +0.1 1,634,031 - SGL_RS09540 0.61 +0.1 1,634,037 - SGL_RS09540 0.62 +0.6 1,634,037 - SGL_RS09540 0.62 +0.5 1,634,122 + SGL_RS09540 0.70 +0.3 1,634,132 + SGL_RS09540 0.72 +0.1 1,634,134 + SGL_RS09540 0.72 +1.3 1,634,134 + SGL_RS09540 0.72 +0.4 1,634,142 - SGL_RS09540 0.73 +0.3 1,634,197 - SGL_RS09540 0.78 +0.0 1,634,243 - SGL_RS09540 0.83 +0.3 1,634,263 - SGL_RS09540 0.85 +0.8 1,634,509 - SGL_RS09545 0.15 +0.1 1,634,510 - SGL_RS09545 0.15 -0.0 1,634,538 + SGL_RS09545 0.20 -0.3 1,634,543 + SGL_RS09545 0.20 +0.1 1,634,546 - SGL_RS09545 0.21 +0.1 1,634,551 - SGL_RS09545 0.22 -0.3 1,634,618 + SGL_RS09545 0.32 -0.1 1,634,618 + SGL_RS09545 0.32 -0.1 1,634,644 - SGL_RS09545 0.36 +0.2 1,634,644 - SGL_RS09545 0.36 +0.0 1,634,668 - SGL_RS09545 0.40 +0.3 1,634,689 + SGL_RS09545 0.43 -0.3 1,634,715 - SGL_RS09545 0.47 +0.5 1,634,719 - SGL_RS09545 0.48 +0.4 1,634,865 + SGL_RS09545 0.70 -0.5 1,634,901 - SGL_RS09545 0.76 -0.2 1,634,927 - SGL_RS09545 0.80 +0.0 1,634,929 + SGL_RS09545 0.80 +0.5 1,634,950 + SGL_RS09545 0.83 +0.2 1,634,950 + SGL_RS09545 0.83 -0.4 1,635,095 + -0.1 1,635,116 - -0.5 1,635,180 + SGL_RS09550 0.16 +0.1 1,635,188 - SGL_RS09550 0.17 +0.1 1,635,197 - SGL_RS09550 0.18 +0.2 1,635,250 + SGL_RS09550 0.26 -0.3 1,635,258 + SGL_RS09550 0.27 +0.3 1,635,258 + SGL_RS09550 0.27 -0.2 1,635,281 + SGL_RS09550 0.31 -0.1 1,635,291 - SGL_RS09550 0.32 -0.3 1,635,312 + SGL_RS09550 0.35 +0.1 1,635,312 + SGL_RS09550 0.35 -0.4 1,635,312 + SGL_RS09550 0.35 -0.1 1,635,320 - SGL_RS09550 0.37 -0.2 1,635,338 + SGL_RS09550 0.39 +0.7 1,635,346 + SGL_RS09550 0.40 -0.0
Or see this region's nucleotide sequence