Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09510

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09505 and SGL_RS09510 are separated by 26 nucleotidesSGL_RS09510 and SGL_RS09515 overlap by 4 nucleotidesSGL_RS09515 and SGL_RS09520 are separated by 13 nucleotides SGL_RS09505: SGL_RS09505 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,626,981 to 1,628,018 _RS09505 SGL_RS09510: SGL_RS09510 - beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase, at 1,628,045 to 1,629,607 _RS09510 SGL_RS09515: SGL_RS09515 - glycosyltransferase family 2 protein, at 1,629,604 to 1,630,434 _RS09515 SGL_RS09520: SGL_RS09520 - DUF115 domain-containing protein, at 1,630,448 to 1,631,005 _RS09520 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -1 0 1at 1627.100 kb on + strand, within SGL_RS09505at 1627.108 kb on - strand, within SGL_RS09505at 1627.126 kb on - strand, within SGL_RS09505at 1627.175 kb on + strand, within SGL_RS09505at 1628.372 kb on - strand, within SGL_RS09510at 1629.486 kb on + strandat 1629.828 kb on - strand, within SGL_RS09515

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,627,100 + SGL_RS09505 0.11 -0.2
1,627,108 - SGL_RS09505 0.12 -0.0
1,627,126 - SGL_RS09505 0.14 +0.4
1,627,175 + SGL_RS09505 0.19 -0.1
1,628,372 - SGL_RS09510 0.21 +0.6
1,629,486 + +0.1
1,629,828 - SGL_RS09515 0.27 -0.0

Or see this region's nucleotide sequence