Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09365

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09360 and SGL_RS09365 are separated by 73 nucleotidesSGL_RS09365 and SGL_RS09370 are separated by 707 nucleotides SGL_RS09360: SGL_RS09360 - IctB family putative bicarbonate transporter, at 1,604,863 to 1,606,287 _RS09360 SGL_RS09365: SGL_RS09365 - DUF3288 family protein, at 1,606,361 to 1,606,645 _RS09365 SGL_RS09370: SGL_RS09370 - superoxide dismutase, at 1,607,353 to 1,607,952 _RS09370 Position (kb) 1606 1607Strain fitness (log2 ratio) -1 0 1 2at 1606.235 kb on + strandat 1606.352 kb on + strandat 1606.381 kb on - strandat 1606.591 kb on - strand, within SGL_RS09365at 1606.609 kb on - strand, within SGL_RS09365at 1606.613 kb on - strand, within SGL_RS09365at 1606.696 kb on + strandat 1606.696 kb on + strandat 1606.775 kb on - strandat 1606.794 kb on + strandat 1606.839 kb on - strandat 1607.023 kb on - strandat 1607.023 kb on - strandat 1607.053 kb on - strandat 1607.054 kb on - strandat 1607.054 kb on - strandat 1607.176 kb on + strandat 1607.279 kb on + strandat 1607.557 kb on + strand, within SGL_RS09370

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,606,235 + +0.1
1,606,352 + +0.0
1,606,381 - -1.0
1,606,591 - SGL_RS09365 0.81 -0.5
1,606,609 - SGL_RS09365 0.87 +2.1
1,606,613 - SGL_RS09365 0.88 +0.1
1,606,696 + -0.1
1,606,696 + -0.6
1,606,775 - +0.3
1,606,794 + -0.3
1,606,839 - -0.1
1,607,023 - -0.2
1,607,023 - -0.6
1,607,053 - -0.4
1,607,054 - +0.2
1,607,054 - +0.0
1,607,176 + -0.1
1,607,279 + +0.3
1,607,557 + SGL_RS09370 0.34 -1.5

Or see this region's nucleotide sequence