Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09240

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09235 and SGL_RS09240 are separated by 380 nucleotidesSGL_RS09240 and SGL_RS09245 are separated by 47 nucleotidesSGL_RS09245 and SGL_RS09250 are separated by 106 nucleotides SGL_RS09235: SGL_RS09235 - adenine phosphoribosyltransferase, at 1,578,725 to 1,579,243 _RS09235 SGL_RS09240: SGL_RS09240 - restriction endonuclease, at 1,579,624 to 1,580,538 _RS09240 SGL_RS09245: SGL_RS09245 - helix-turn-helix domain-containing protein, at 1,580,586 to 1,580,825 _RS09245 SGL_RS09250: SGL_RS09250 - bile acid:sodium symporter family protein, at 1,580,932 to 1,581,810 _RS09250 Position (kb) 1579 1580 1581Strain fitness (log2 ratio) -1 0 1at 1578.859 kb on - strand, within SGL_RS09235at 1579.089 kb on - strand, within SGL_RS09235at 1579.113 kb on - strand, within SGL_RS09235at 1579.145 kb on - strand, within SGL_RS09235at 1579.150 kb on + strand, within SGL_RS09235at 1579.252 kb on + strandat 1579.253 kb on + strandat 1579.261 kb on - strandat 1579.293 kb on + strandat 1579.301 kb on - strandat 1579.344 kb on + strandat 1579.352 kb on - strandat 1579.429 kb on - strandat 1579.457 kb on + strandat 1579.556 kb on + strandat 1580.392 kb on - strand, within SGL_RS09240at 1580.630 kb on - strand, within SGL_RS09245at 1580.656 kb on + strand, within SGL_RS09245at 1580.656 kb on + strand, within SGL_RS09245at 1580.664 kb on - strand, within SGL_RS09245at 1580.785 kb on + strand, within SGL_RS09245at 1581.154 kb on + strand, within SGL_RS09250at 1581.200 kb on + strand, within SGL_RS09250

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,578,859 - SGL_RS09235 0.26 -0.0
1,579,089 - SGL_RS09235 0.70 -0.0
1,579,113 - SGL_RS09235 0.75 +0.7
1,579,145 - SGL_RS09235 0.81 +0.3
1,579,150 + SGL_RS09235 0.82 +0.2
1,579,252 + +0.2
1,579,253 + -0.6
1,579,261 - +0.3
1,579,293 + +0.8
1,579,301 - +0.1
1,579,344 + -0.1
1,579,352 - +0.4
1,579,429 - -0.5
1,579,457 + +1.1
1,579,556 + -0.6
1,580,392 - SGL_RS09240 0.84 +0.4
1,580,630 - SGL_RS09245 0.18 +0.2
1,580,656 + SGL_RS09245 0.29 +0.3
1,580,656 + SGL_RS09245 0.29 +0.1
1,580,664 - SGL_RS09245 0.33 -0.0
1,580,785 + SGL_RS09245 0.83 +0.1
1,581,154 + SGL_RS09250 0.25 +0.1
1,581,200 + SGL_RS09250 0.30 -0.1

Or see this region's nucleotide sequence