Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08900 and SGL_RS08905 are separated by 161 nucleotides SGL_RS08905 and SGL_RS08910 are separated by 78 nucleotides SGL_RS08910 and SGL_RS08915 are separated by 95 nucleotides
SGL_RS08900: SGL_RS08900 - DUF6335 family protein, at 1,506,876 to 1,507,319
_RS08900
SGL_RS08905: SGL_RS08905 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,507,481 to 1,508,092
_RS08905
SGL_RS08910: SGL_RS08910 - hypothetical protein, at 1,508,171 to 1,508,386
_RS08910
SGL_RS08915: SGL_RS08915 - SpoIID/LytB domain-containing protein, at 1,508,482 to 1,509,768
_RS08915
Position (kb)
1508
1509 Strain fitness (log2 ratio)
-1
0
1 at 1507.187 kb on + strand, within SGL_RS08900 at 1507.255 kb on + strand, within SGL_RS08900 at 1507.718 kb on + strand, within SGL_RS08905 at 1507.726 kb on - strand, within SGL_RS08905 at 1508.129 kb on - strand at 1508.129 kb on - strand at 1508.195 kb on + strand, within SGL_RS08910 at 1508.644 kb on - strand, within SGL_RS08915 at 1508.713 kb on + strand, within SGL_RS08915 at 1508.713 kb on + strand, within SGL_RS08915 at 1508.721 kb on - strand, within SGL_RS08915 at 1508.754 kb on + strand, within SGL_RS08915 at 1508.805 kb on + strand, within SGL_RS08915 at 1508.906 kb on - strand, within SGL_RS08915 at 1508.986 kb on - strand, within SGL_RS08915 at 1509.053 kb on + strand, within SGL_RS08915 at 1509.098 kb on - strand, within SGL_RS08915 at 1509.106 kb on + strand, within SGL_RS08915 at 1509.106 kb on + strand, within SGL_RS08915 at 1509.106 kb on + strand, within SGL_RS08915 at 1509.113 kb on - strand, within SGL_RS08915 at 1509.141 kb on - strand, within SGL_RS08915 at 1509.217 kb on - strand, within SGL_RS08915 at 1509.217 kb on - strand, within SGL_RS08915 at 1509.262 kb on + strand, within SGL_RS08915 at 1509.318 kb on + strand, within SGL_RS08915 at 1509.378 kb on + strand, within SGL_RS08915
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 1,507,187 + SGL_RS08900 0.70 +0.3 1,507,255 + SGL_RS08900 0.85 -0.1 1,507,718 + SGL_RS08905 0.39 -1.1 1,507,726 - SGL_RS08905 0.40 -0.5 1,508,129 - -0.2 1,508,129 - +0.4 1,508,195 + SGL_RS08910 0.11 +0.2 1,508,644 - SGL_RS08915 0.13 -0.1 1,508,713 + SGL_RS08915 0.18 -0.2 1,508,713 + SGL_RS08915 0.18 -0.3 1,508,721 - SGL_RS08915 0.19 -0.6 1,508,754 + SGL_RS08915 0.21 -0.3 1,508,805 + SGL_RS08915 0.25 +1.2 1,508,906 - SGL_RS08915 0.33 -0.5 1,508,986 - SGL_RS08915 0.39 -1.6 1,509,053 + SGL_RS08915 0.44 -0.1 1,509,098 - SGL_RS08915 0.48 +0.1 1,509,106 + SGL_RS08915 0.48 -0.3 1,509,106 + SGL_RS08915 0.48 -0.1 1,509,106 + SGL_RS08915 0.48 -0.1 1,509,113 - SGL_RS08915 0.49 +0.2 1,509,141 - SGL_RS08915 0.51 -0.6 1,509,217 - SGL_RS08915 0.57 -0.1 1,509,217 - SGL_RS08915 0.57 +0.1 1,509,262 + SGL_RS08915 0.61 -0.3 1,509,318 + SGL_RS08915 0.65 -0.0 1,509,378 + SGL_RS08915 0.70 -0.2
Or see this region's nucleotide sequence