Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08330

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08325 and SGL_RS08330 are separated by 3 nucleotidesSGL_RS08330 and SGL_RS08335 are separated by 16 nucleotidesSGL_RS08335 and SGL_RS08340 are separated by 90 nucleotides SGL_RS08325: SGL_RS08325 - DMT family transporter, at 1,378,662 to 1,379,711 _RS08325 SGL_RS08330: SGL_RS08330 - cupin domain-containing protein, at 1,379,715 to 1,380,068 _RS08330 SGL_RS08335: SGL_RS08335 - DUF4079 domain-containing protein, at 1,380,085 to 1,380,792 _RS08335 SGL_RS08340: SGL_RS08340 - adenylate/guanylate cyclase domain-containing protein, at 1,380,883 to 1,381,890 _RS08340 Position (kb) 1379 1380 1381Strain fitness (log2 ratio) -1 0 1at 1379.261 kb on + strand, within SGL_RS08325at 1379.533 kb on + strand, within SGL_RS08325at 1379.924 kb on + strand, within SGL_RS08330at 1379.928 kb on - strand, within SGL_RS08330at 1380.562 kb on + strand, within SGL_RS08335at 1380.562 kb on + strand, within SGL_RS08335at 1380.714 kb on - strand, within SGL_RS08335

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,379,261 + SGL_RS08325 0.57 +0.1
1,379,533 + SGL_RS08325 0.83 -0.3
1,379,924 + SGL_RS08330 0.59 +0.8
1,379,928 - SGL_RS08330 0.60 +0.4
1,380,562 + SGL_RS08335 0.67 +0.0
1,380,562 + SGL_RS08335 0.67 -0.3
1,380,714 - SGL_RS08335 0.89 +0.0

Or see this region's nucleotide sequence