Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07420

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07410 and SGL_RS07415 are separated by 11 nucleotidesSGL_RS07415 and SGL_RS07420 are separated by 69 nucleotidesSGL_RS07420 and SGL_RS07425 are separated by 32 nucleotides SGL_RS07410: SGL_RS07410 - hypothetical protein, at 1,190,867 to 1,191,433 _RS07410 SGL_RS07415: SGL_RS07415 - carboxymuconolactone decarboxylase family protein, at 1,191,445 to 1,191,786 _RS07415 SGL_RS07420: SGL_RS07420 - DJ-1/PfpI family protein, at 1,191,856 to 1,192,452 _RS07420 SGL_RS07425: SGL_RS07425 - AGE family epimerase/isomerase, at 1,192,485 to 1,194,308 _RS07425 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -1 0 1at 1190.918 kb on - strandat 1190.978 kb on + strand, within SGL_RS07410at 1191.013 kb on + strand, within SGL_RS07410at 1191.021 kb on - strand, within SGL_RS07410at 1191.083 kb on - strand, within SGL_RS07410at 1191.094 kb on - strand, within SGL_RS07410at 1191.161 kb on - strand, within SGL_RS07410at 1191.231 kb on + strand, within SGL_RS07410at 1191.235 kb on - strand, within SGL_RS07410at 1191.313 kb on + strand, within SGL_RS07410at 1191.313 kb on + strand, within SGL_RS07410at 1191.434 kb on + strandat 1191.637 kb on + strand, within SGL_RS07415at 1191.948 kb on + strand, within SGL_RS07420at 1191.991 kb on + strand, within SGL_RS07420at 1191.991 kb on + strand, within SGL_RS07420at 1192.035 kb on - strand, within SGL_RS07420at 1192.616 kb on + strandat 1192.650 kb on + strandat 1192.682 kb on - strand, within SGL_RS07425at 1192.691 kb on - strand, within SGL_RS07425at 1192.785 kb on + strand, within SGL_RS07425at 1192.968 kb on + strand, within SGL_RS07425at 1192.988 kb on - strand, within SGL_RS07425at 1193.211 kb on + strand, within SGL_RS07425at 1193.240 kb on - strand, within SGL_RS07425at 1193.254 kb on + strand, within SGL_RS07425at 1193.266 kb on + strand, within SGL_RS07425at 1193.266 kb on + strand, within SGL_RS07425at 1193.266 kb on + strand, within SGL_RS07425at 1193.267 kb on - strand, within SGL_RS07425

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,190,918 - -0.1
1,190,978 + SGL_RS07410 0.20 +0.1
1,191,013 + SGL_RS07410 0.26 +0.0
1,191,021 - SGL_RS07410 0.27 -0.2
1,191,083 - SGL_RS07410 0.38 -0.1
1,191,094 - SGL_RS07410 0.40 -0.0
1,191,161 - SGL_RS07410 0.52 +0.5
1,191,231 + SGL_RS07410 0.64 +0.5
1,191,235 - SGL_RS07410 0.65 -0.4
1,191,313 + SGL_RS07410 0.79 +0.3
1,191,313 + SGL_RS07410 0.79 +0.1
1,191,434 + +0.4
1,191,637 + SGL_RS07415 0.56 -1.3
1,191,948 + SGL_RS07420 0.15 +0.1
1,191,991 + SGL_RS07420 0.23 +0.4
1,191,991 + SGL_RS07420 0.23 +0.4
1,192,035 - SGL_RS07420 0.30 +0.3
1,192,616 + +0.1
1,192,650 + -0.5
1,192,682 - SGL_RS07425 0.11 -0.1
1,192,691 - SGL_RS07425 0.11 +0.4
1,192,785 + SGL_RS07425 0.16 +0.3
1,192,968 + SGL_RS07425 0.26 +0.1
1,192,988 - SGL_RS07425 0.28 +0.2
1,193,211 + SGL_RS07425 0.40 -0.3
1,193,240 - SGL_RS07425 0.41 -0.3
1,193,254 + SGL_RS07425 0.42 +0.4
1,193,266 + SGL_RS07425 0.43 -0.0
1,193,266 + SGL_RS07425 0.43 -0.2
1,193,266 + SGL_RS07425 0.43 +0.2
1,193,267 - SGL_RS07425 0.43 -0.2

Or see this region's nucleotide sequence