Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07410 and SGL_RS07415 are separated by 11 nucleotides SGL_RS07415 and SGL_RS07420 are separated by 69 nucleotides SGL_RS07420 and SGL_RS07425 are separated by 32 nucleotides
SGL_RS07410: SGL_RS07410 - hypothetical protein, at 1,190,867 to 1,191,433
_RS07410
SGL_RS07415: SGL_RS07415 - carboxymuconolactone decarboxylase family protein, at 1,191,445 to 1,191,786
_RS07415
SGL_RS07420: SGL_RS07420 - DJ-1/PfpI family protein, at 1,191,856 to 1,192,452
_RS07420
SGL_RS07425: SGL_RS07425 - AGE family epimerase/isomerase, at 1,192,485 to 1,194,308
_RS07425
Position (kb)
1191
1192
1193 Strain fitness (log2 ratio)
-1
0
1 at 1190.918 kb on - strand at 1190.978 kb on + strand, within SGL_RS07410 at 1191.013 kb on + strand, within SGL_RS07410 at 1191.021 kb on - strand, within SGL_RS07410 at 1191.083 kb on - strand, within SGL_RS07410 at 1191.094 kb on - strand, within SGL_RS07410 at 1191.161 kb on - strand, within SGL_RS07410 at 1191.231 kb on + strand, within SGL_RS07410 at 1191.235 kb on - strand, within SGL_RS07410 at 1191.313 kb on + strand, within SGL_RS07410 at 1191.313 kb on + strand, within SGL_RS07410 at 1191.434 kb on + strand at 1191.637 kb on + strand, within SGL_RS07415 at 1191.948 kb on + strand, within SGL_RS07420 at 1191.991 kb on + strand, within SGL_RS07420 at 1191.991 kb on + strand, within SGL_RS07420 at 1192.035 kb on - strand, within SGL_RS07420 at 1192.616 kb on + strand at 1192.650 kb on + strand at 1192.682 kb on - strand, within SGL_RS07425 at 1192.691 kb on - strand, within SGL_RS07425 at 1192.785 kb on + strand, within SGL_RS07425 at 1192.968 kb on + strand, within SGL_RS07425 at 1192.988 kb on - strand, within SGL_RS07425 at 1193.211 kb on + strand, within SGL_RS07425 at 1193.240 kb on - strand, within SGL_RS07425 at 1193.254 kb on + strand, within SGL_RS07425 at 1193.266 kb on + strand, within SGL_RS07425 at 1193.266 kb on + strand, within SGL_RS07425 at 1193.266 kb on + strand, within SGL_RS07425 at 1193.267 kb on - strand, within SGL_RS07425
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 1,190,918 - -0.1 1,190,978 + SGL_RS07410 0.20 +0.1 1,191,013 + SGL_RS07410 0.26 +0.0 1,191,021 - SGL_RS07410 0.27 -0.2 1,191,083 - SGL_RS07410 0.38 -0.1 1,191,094 - SGL_RS07410 0.40 -0.0 1,191,161 - SGL_RS07410 0.52 +0.5 1,191,231 + SGL_RS07410 0.64 +0.5 1,191,235 - SGL_RS07410 0.65 -0.4 1,191,313 + SGL_RS07410 0.79 +0.3 1,191,313 + SGL_RS07410 0.79 +0.1 1,191,434 + +0.4 1,191,637 + SGL_RS07415 0.56 -1.3 1,191,948 + SGL_RS07420 0.15 +0.1 1,191,991 + SGL_RS07420 0.23 +0.4 1,191,991 + SGL_RS07420 0.23 +0.4 1,192,035 - SGL_RS07420 0.30 +0.3 1,192,616 + +0.1 1,192,650 + -0.5 1,192,682 - SGL_RS07425 0.11 -0.1 1,192,691 - SGL_RS07425 0.11 +0.4 1,192,785 + SGL_RS07425 0.16 +0.3 1,192,968 + SGL_RS07425 0.26 +0.1 1,192,988 - SGL_RS07425 0.28 +0.2 1,193,211 + SGL_RS07425 0.40 -0.3 1,193,240 - SGL_RS07425 0.41 -0.3 1,193,254 + SGL_RS07425 0.42 +0.4 1,193,266 + SGL_RS07425 0.43 -0.0 1,193,266 + SGL_RS07425 0.43 -0.2 1,193,266 + SGL_RS07425 0.43 +0.2 1,193,267 - SGL_RS07425 0.43 -0.2
Or see this region's nucleotide sequence