Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07385 and SGL_RS07390 are separated by 20 nucleotides SGL_RS07390 and SGL_RS07395 overlap by 4 nucleotides SGL_RS07395 and SGL_RS19575 are separated by 26 nucleotides SGL_RS19575 and SGL_RS07400 are separated by 27 nucleotides
SGL_RS07385: SGL_RS07385 - alpha/beta hydrolase, at 1,186,311 to 1,187,198
_RS07385
SGL_RS07390: SGL_RS07390 - sugar phosphate isomerase/epimerase family protein, at 1,187,219 to 1,188,082
_RS07390
SGL_RS07395: SGL_RS07395 - cupin domain-containing protein, at 1,188,079 to 1,188,885
_RS07395
SGL_RS19575: SGL_RS19575 - hypothetical protein, at 1,188,912 to 1,189,082
_RS19575
SGL_RS07400: SGL_RS07400 - cupin domain-containing protein, at 1,189,110 to 1,189,913
_RS07400
Position (kb)
1188
1189 Strain fitness (log2 ratio)
-1
0
1 at 1187.162 kb on - strand at 1187.429 kb on + strand, within SGL_RS07390 at 1187.437 kb on - strand, within SGL_RS07390 at 1187.541 kb on - strand, within SGL_RS07390 at 1187.545 kb on + strand, within SGL_RS07390 at 1187.575 kb on - strand, within SGL_RS07390 at 1187.592 kb on + strand, within SGL_RS07390 at 1187.674 kb on + strand, within SGL_RS07390 at 1187.682 kb on - strand, within SGL_RS07390 at 1187.750 kb on - strand, within SGL_RS07390 at 1187.750 kb on - strand, within SGL_RS07390 at 1187.754 kb on + strand, within SGL_RS07390 at 1187.867 kb on + strand, within SGL_RS07390 at 1187.898 kb on - strand, within SGL_RS07390 at 1188.525 kb on + strand, within SGL_RS07395 at 1188.620 kb on + strand, within SGL_RS07395 at 1188.783 kb on - strand, within SGL_RS07395 at 1189.453 kb on - strand, within SGL_RS07400 at 1189.522 kb on + strand, within SGL_RS07400 at 1189.711 kb on - strand, within SGL_RS07400 at 1189.711 kb on - strand, within SGL_RS07400 at 1189.718 kb on - strand, within SGL_RS07400
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 1,187,162 - -0.1 1,187,429 + SGL_RS07390 0.24 +0.2 1,187,437 - SGL_RS07390 0.25 +1.6 1,187,541 - SGL_RS07390 0.37 -0.0 1,187,545 + SGL_RS07390 0.38 -0.4 1,187,575 - SGL_RS07390 0.41 +0.5 1,187,592 + SGL_RS07390 0.43 -0.2 1,187,674 + SGL_RS07390 0.53 -0.4 1,187,682 - SGL_RS07390 0.54 -0.4 1,187,750 - SGL_RS07390 0.61 -0.2 1,187,750 - SGL_RS07390 0.61 -0.3 1,187,754 + SGL_RS07390 0.62 +0.5 1,187,867 + SGL_RS07390 0.75 +0.3 1,187,898 - SGL_RS07390 0.79 +0.0 1,188,525 + SGL_RS07395 0.55 +0.1 1,188,620 + SGL_RS07395 0.67 +1.0 1,188,783 - SGL_RS07395 0.87 -0.4 1,189,453 - SGL_RS07400 0.43 +0.1 1,189,522 + SGL_RS07400 0.51 -0.3 1,189,711 - SGL_RS07400 0.75 +0.2 1,189,711 - SGL_RS07400 0.75 +0.2 1,189,718 - SGL_RS07400 0.76 +0.3
Or see this region's nucleotide sequence