Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07395

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07385 and SGL_RS07390 are separated by 20 nucleotidesSGL_RS07390 and SGL_RS07395 overlap by 4 nucleotidesSGL_RS07395 and SGL_RS19575 are separated by 26 nucleotidesSGL_RS19575 and SGL_RS07400 are separated by 27 nucleotides SGL_RS07385: SGL_RS07385 - alpha/beta hydrolase, at 1,186,311 to 1,187,198 _RS07385 SGL_RS07390: SGL_RS07390 - sugar phosphate isomerase/epimerase family protein, at 1,187,219 to 1,188,082 _RS07390 SGL_RS07395: SGL_RS07395 - cupin domain-containing protein, at 1,188,079 to 1,188,885 _RS07395 SGL_RS19575: SGL_RS19575 - hypothetical protein, at 1,188,912 to 1,189,082 _RS19575 SGL_RS07400: SGL_RS07400 - cupin domain-containing protein, at 1,189,110 to 1,189,913 _RS07400 Position (kb) 1188 1189Strain fitness (log2 ratio) -1 0 1at 1187.162 kb on - strandat 1187.429 kb on + strand, within SGL_RS07390at 1187.437 kb on - strand, within SGL_RS07390at 1187.541 kb on - strand, within SGL_RS07390at 1187.545 kb on + strand, within SGL_RS07390at 1187.575 kb on - strand, within SGL_RS07390at 1187.592 kb on + strand, within SGL_RS07390at 1187.674 kb on + strand, within SGL_RS07390at 1187.682 kb on - strand, within SGL_RS07390at 1187.750 kb on - strand, within SGL_RS07390at 1187.750 kb on - strand, within SGL_RS07390at 1187.754 kb on + strand, within SGL_RS07390at 1187.867 kb on + strand, within SGL_RS07390at 1187.898 kb on - strand, within SGL_RS07390at 1188.525 kb on + strand, within SGL_RS07395at 1188.620 kb on + strand, within SGL_RS07395at 1188.783 kb on - strand, within SGL_RS07395at 1189.453 kb on - strand, within SGL_RS07400at 1189.522 kb on + strand, within SGL_RS07400at 1189.711 kb on - strand, within SGL_RS07400at 1189.711 kb on - strand, within SGL_RS07400at 1189.718 kb on - strand, within SGL_RS07400

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,187,162 - -0.1
1,187,429 + SGL_RS07390 0.24 +0.2
1,187,437 - SGL_RS07390 0.25 +1.6
1,187,541 - SGL_RS07390 0.37 -0.0
1,187,545 + SGL_RS07390 0.38 -0.4
1,187,575 - SGL_RS07390 0.41 +0.5
1,187,592 + SGL_RS07390 0.43 -0.2
1,187,674 + SGL_RS07390 0.53 -0.4
1,187,682 - SGL_RS07390 0.54 -0.4
1,187,750 - SGL_RS07390 0.61 -0.2
1,187,750 - SGL_RS07390 0.61 -0.3
1,187,754 + SGL_RS07390 0.62 +0.5
1,187,867 + SGL_RS07390 0.75 +0.3
1,187,898 - SGL_RS07390 0.79 +0.0
1,188,525 + SGL_RS07395 0.55 +0.1
1,188,620 + SGL_RS07395 0.67 +1.0
1,188,783 - SGL_RS07395 0.87 -0.4
1,189,453 - SGL_RS07400 0.43 +0.1
1,189,522 + SGL_RS07400 0.51 -0.3
1,189,711 - SGL_RS07400 0.75 +0.2
1,189,711 - SGL_RS07400 0.75 +0.2
1,189,718 - SGL_RS07400 0.76 +0.3

Or see this region's nucleotide sequence