Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06795

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06785 and SGL_RS06790 are separated by 52 nucleotidesSGL_RS06790 and SGL_RS06795 are separated by 82 nucleotidesSGL_RS06795 and SGL_RS06800 are separated by 80 nucleotides SGL_RS06785: SGL_RS06785 - alpha/beta hydrolase, at 1,049,517 to 1,050,407 _RS06785 SGL_RS06790: SGL_RS06790 - hypothetical protein, at 1,050,460 to 1,050,729 _RS06790 SGL_RS06795: SGL_RS06795 - glutaredoxin 3, at 1,050,812 to 1,051,078 _RS06795 SGL_RS06800: SGL_RS06800 - glutathione synthase, at 1,051,159 to 1,052,121 _RS06800 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -1 0 1at 1049.841 kb on + strand, within SGL_RS06785at 1049.864 kb on + strand, within SGL_RS06785at 1049.872 kb on - strand, within SGL_RS06785at 1049.945 kb on + strand, within SGL_RS06785at 1050.011 kb on - strand, within SGL_RS06785at 1050.252 kb on + strand, within SGL_RS06785at 1050.263 kb on + strand, within SGL_RS06785at 1050.302 kb on + strand, within SGL_RS06785at 1050.389 kb on + strandat 1050.390 kb on + strandat 1050.397 kb on - strandat 1050.397 kb on - strandat 1050.398 kb on - strandat 1050.409 kb on + strandat 1050.409 kb on - strandat 1050.645 kb on + strand, within SGL_RS06790at 1050.733 kb on - strandat 1051.037 kb on - strand, within SGL_RS06795at 1051.082 kb on + strandat 1051.146 kb on + strandat 1051.217 kb on - strandat 1051.310 kb on - strand, within SGL_RS06800at 1051.374 kb on + strand, within SGL_RS06800at 1051.389 kb on + strand, within SGL_RS06800at 1051.389 kb on + strand, within SGL_RS06800at 1051.408 kb on + strand, within SGL_RS06800at 1051.437 kb on - strand, within SGL_RS06800at 1051.542 kb on - strand, within SGL_RS06800at 1051.641 kb on + strand, within SGL_RS06800at 1051.737 kb on + strand, within SGL_RS06800at 1052.064 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,049,841 + SGL_RS06785 0.36 +1.0
1,049,864 + SGL_RS06785 0.39 +0.5
1,049,872 - SGL_RS06785 0.40 -0.2
1,049,945 + SGL_RS06785 0.48 +1.1
1,050,011 - SGL_RS06785 0.55 +0.1
1,050,252 + SGL_RS06785 0.82 -0.8
1,050,263 + SGL_RS06785 0.84 +0.3
1,050,302 + SGL_RS06785 0.88 +0.5
1,050,389 + -0.5
1,050,390 + -0.4
1,050,397 - -0.4
1,050,397 - +0.1
1,050,398 - -0.1
1,050,409 + -0.1
1,050,409 - -0.2
1,050,645 + SGL_RS06790 0.69 +0.2
1,050,733 - -0.4
1,051,037 - SGL_RS06795 0.84 +0.9
1,051,082 + -0.3
1,051,146 + +0.0
1,051,217 - -0.3
1,051,310 - SGL_RS06800 0.16 -0.4
1,051,374 + SGL_RS06800 0.22 -0.7
1,051,389 + SGL_RS06800 0.24 -0.6
1,051,389 + SGL_RS06800 0.24 -1.3
1,051,408 + SGL_RS06800 0.26 -1.2
1,051,437 - SGL_RS06800 0.29 -0.7
1,051,542 - SGL_RS06800 0.40 -0.5
1,051,641 + SGL_RS06800 0.50 -0.7
1,051,737 + SGL_RS06800 0.60 -0.8
1,052,064 + -0.6

Or see this region's nucleotide sequence