Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06720

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06715 and SGL_RS06720 are separated by 153 nucleotidesSGL_RS06720 and SGL_RS06725 are separated by 359 nucleotidesSGL_RS06725 and SGL_RS06730 are separated by 175 nucleotides SGL_RS06715: SGL_RS06715 - NAD(P)/FAD-dependent oxidoreductase, at 1,038,038 to 1,039,042 _RS06715 SGL_RS06720: SGL_RS06720 - SH3 domain-containing protein, at 1,039,196 to 1,039,732 _RS06720 SGL_RS06725: SGL_RS06725 - hypothetical protein, at 1,040,092 to 1,040,355 _RS06725 SGL_RS06730: SGL_RS06730 - succinate dehydrogenase/fumarate reductase flavoprotein subunit, at 1,040,531 to 1,042,258 _RS06730 Position (kb) 1039 1040Strain fitness (log2 ratio) -1 0 1at 1038.230 kb on - strand, within SGL_RS06715at 1038.248 kb on + strand, within SGL_RS06715at 1038.248 kb on + strand, within SGL_RS06715at 1038.256 kb on - strand, within SGL_RS06715at 1038.278 kb on + strand, within SGL_RS06715at 1038.340 kb on + strand, within SGL_RS06715at 1038.363 kb on + strand, within SGL_RS06715at 1038.409 kb on + strand, within SGL_RS06715at 1038.476 kb on + strand, within SGL_RS06715at 1038.500 kb on - strand, within SGL_RS06715at 1038.552 kb on - strand, within SGL_RS06715at 1038.649 kb on - strand, within SGL_RS06715at 1038.734 kb on - strand, within SGL_RS06715at 1038.770 kb on + strand, within SGL_RS06715at 1038.799 kb on + strand, within SGL_RS06715at 1038.804 kb on + strand, within SGL_RS06715at 1038.817 kb on + strand, within SGL_RS06715at 1038.825 kb on - strand, within SGL_RS06715at 1038.906 kb on - strand, within SGL_RS06715at 1038.935 kb on - strand, within SGL_RS06715at 1038.966 kb on - strandat 1038.966 kb on - strandat 1039.365 kb on - strand, within SGL_RS06720at 1039.632 kb on - strand, within SGL_RS06720at 1039.644 kb on + strand, within SGL_RS06720at 1039.691 kb on - strandat 1039.691 kb on - strandat 1039.692 kb on + strandat 1039.858 kb on + strandat 1039.891 kb on + strandat 1039.899 kb on - strandat 1040.147 kb on - strand, within SGL_RS06725at 1040.185 kb on + strand, within SGL_RS06725at 1040.218 kb on - strand, within SGL_RS06725at 1040.248 kb on - strand, within SGL_RS06725at 1040.473 kb on + strandat 1040.613 kb on + strandat 1040.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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1,038,230 - SGL_RS06715 0.19 +0.0
1,038,248 + SGL_RS06715 0.21 -0.4
1,038,248 + SGL_RS06715 0.21 -0.3
1,038,256 - SGL_RS06715 0.22 -0.1
1,038,278 + SGL_RS06715 0.24 -0.2
1,038,340 + SGL_RS06715 0.30 -0.5
1,038,363 + SGL_RS06715 0.32 -0.8
1,038,409 + SGL_RS06715 0.37 +0.1
1,038,476 + SGL_RS06715 0.44 -0.8
1,038,500 - SGL_RS06715 0.46 -0.1
1,038,552 - SGL_RS06715 0.51 +0.5
1,038,649 - SGL_RS06715 0.61 +0.2
1,038,734 - SGL_RS06715 0.69 +0.2
1,038,770 + SGL_RS06715 0.73 -0.2
1,038,799 + SGL_RS06715 0.76 -0.1
1,038,804 + SGL_RS06715 0.76 +0.0
1,038,817 + SGL_RS06715 0.78 +0.1
1,038,825 - SGL_RS06715 0.78 +0.2
1,038,906 - SGL_RS06715 0.86 +0.1
1,038,935 - SGL_RS06715 0.89 -1.3
1,038,966 - +0.3
1,038,966 - -0.1
1,039,365 - SGL_RS06720 0.31 -0.2
1,039,632 - SGL_RS06720 0.81 +0.1
1,039,644 + SGL_RS06720 0.83 +0.6
1,039,691 - +0.2
1,039,691 - +0.0
1,039,692 + +0.1
1,039,858 + +0.8
1,039,891 + -0.1
1,039,899 - -0.3
1,040,147 - SGL_RS06725 0.21 -0.1
1,040,185 + SGL_RS06725 0.35 -0.4
1,040,218 - SGL_RS06725 0.48 -0.1
1,040,248 - SGL_RS06725 0.59 -0.1
1,040,473 + -0.2
1,040,613 + +0.4
1,040,632 + -0.3

Or see this region's nucleotide sequence