Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06545 and SGL_RS06550 are separated by 42 nucleotides SGL_RS06550 and SGL_RS06555 are separated by 203 nucleotides
SGL_RS06545: SGL_RS06545 - lysine--tRNA ligase, at 995,275 to 996,807
_RS06545
SGL_RS06550: SGL_RS06550 - glycosyltransferase family 2 protein, at 996,850 to 997,806
_RS06550
SGL_RS06555: SGL_RS06555 - FkbM family methyltransferase, at 998,010 to 998,918
_RS06555
Position (kb) 996
997
998 Strain fitness (log2 ratio) -1
0
1 at 996.997 kb on + strand, within SGL_RS06550 at 997.030 kb on + strand, within SGL_RS06550 at 997.062 kb on - strand, within SGL_RS06550 at 997.204 kb on + strand, within SGL_RS06550 at 997.204 kb on + strand, within SGL_RS06550 at 997.239 kb on + strand, within SGL_RS06550 at 997.239 kb on + strand, within SGL_RS06550 at 997.392 kb on - strand, within SGL_RS06550 at 997.400 kb on + strand, within SGL_RS06550 at 997.432 kb on + strand, within SGL_RS06550 at 997.465 kb on - strand, within SGL_RS06550 at 997.534 kb on - strand, within SGL_RS06550 at 997.657 kb on + strand, within SGL_RS06550 at 997.916 kb on + strand at 997.998 kb on + strand at 998.022 kb on + strand at 998.025 kb on - strand at 998.275 kb on + strand, within SGL_RS06555 at 998.312 kb on - strand, within SGL_RS06555 at 998.453 kb on + strand, within SGL_RS06555 at 998.602 kb on - strand, within SGL_RS06555 at 998.666 kb on + strand, within SGL_RS06555 at 998.676 kb on - strand, within SGL_RS06555 at 998.702 kb on + strand, within SGL_RS06555 at 998.724 kb on + strand, within SGL_RS06555 at 998.724 kb on + strand, within SGL_RS06555 at 998.732 kb on - strand, within SGL_RS06555 at 998.732 kb on - strand, within SGL_RS06555 at 998.732 kb on - strand, within SGL_RS06555 at 998.734 kb on + strand, within SGL_RS06555 at 998.777 kb on - strand, within SGL_RS06555
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 996,997 + SGL_RS06550 0.15 +0.8 997,030 + SGL_RS06550 0.19 +0.2 997,062 - SGL_RS06550 0.22 +1.2 997,204 + SGL_RS06550 0.37 +0.4 997,204 + SGL_RS06550 0.37 +0.9 997,239 + SGL_RS06550 0.41 -0.0 997,239 + SGL_RS06550 0.41 +0.1 997,392 - SGL_RS06550 0.57 +0.2 997,400 + SGL_RS06550 0.57 -0.2 997,432 + SGL_RS06550 0.61 -0.0 997,465 - SGL_RS06550 0.64 +0.7 997,534 - SGL_RS06550 0.71 -0.0 997,657 + SGL_RS06550 0.84 +0.2 997,916 + -0.2 997,998 + -0.7 998,022 + -0.6 998,025 - -0.1 998,275 + SGL_RS06555 0.29 +0.7 998,312 - SGL_RS06555 0.33 -0.6 998,453 + SGL_RS06555 0.49 +0.4 998,602 - SGL_RS06555 0.65 +0.2 998,666 + SGL_RS06555 0.72 +0.3 998,676 - SGL_RS06555 0.73 -0.2 998,702 + SGL_RS06555 0.76 -0.4 998,724 + SGL_RS06555 0.79 +0.0 998,724 + SGL_RS06555 0.79 +0.6 998,732 - SGL_RS06555 0.79 -0.2 998,732 - SGL_RS06555 0.79 +0.1 998,732 - SGL_RS06555 0.79 +0.3 998,734 + SGL_RS06555 0.80 +0.3 998,777 - SGL_RS06555 0.84 -0.3
Or see this region's nucleotide sequence